miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 129225 0.7 0.765975
Target:  5'- -cUCGaGCUCGGCGG-ACGCGuaagaucuuacgcGUCGGCa -3'
miRNA:   3'- gcGGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 129147 0.7 0.793518
Target:  5'- --aCGaGCUCGGCGG-ACGCGuaggaucuuacgcGUCGGCa -3'
miRNA:   3'- gcgGC-CGAGCUGUCuUGCGU-------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 127347 0.66 0.939595
Target:  5'- aCGCCuaaacugaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCa -3'
miRNA:   3'- -GCGGc-------CGAGCUGUCU-UGCGUUa-----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 126578 0.69 0.837271
Target:  5'- cCGCgGGCUUGGCGaucacguccuGGGCGauGUCGGCc -3'
miRNA:   3'- -GCGgCCGAGCUGU----------CUUGCguUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124798 0.67 0.913884
Target:  5'- cCGCCGGCgagggccggggccUCGAUcGGACGguCGAggaguUCGGCa -3'
miRNA:   3'- -GCGGCCG-------------AGCUGuCUUGC--GUU-----AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124279 0.7 0.765975
Target:  5'- cCGUCGGC-CGACGcucuGAUGCAaugguacGUCGGCg -3'
miRNA:   3'- -GCGGCCGaGCUGUc---UUGCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 124212 0.66 0.935782
Target:  5'- gCGCCGGCUCGugAc--CGacuaCGGCc -3'
miRNA:   3'- -GCGGCCGAGCugUcuuGCguuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 123495 0.76 0.461855
Target:  5'- uCGCCGGCUCGucgcacaccACGGcGCGCucgcCGGCg -3'
miRNA:   3'- -GCGGCCGAGC---------UGUCuUGCGuua-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 123179 0.7 0.764099
Target:  5'- uCGCCGGCgCGcuccaGGAACGCGcagacgucgucgucGUCGGUc -3'
miRNA:   3'- -GCGGCCGaGCug---UCUUGCGU--------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 122969 0.68 0.868314
Target:  5'- aCGCCGGCUCuGuuuuCGcGAACGCcguccaccgCGGCc -3'
miRNA:   3'- -GCGGCCGAG-Cu---GU-CUUGCGuua------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 122724 0.68 0.868314
Target:  5'- cCGUCGGUcgCGACGGAcaGCAGcuugcgCGGCa -3'
miRNA:   3'- -GCGGCCGa-GCUGUCUugCGUUa-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 122636 0.71 0.737382
Target:  5'- gCGCCGGCgucggUCGAgAGAgcaccugaacgcgGCGCcGUCGGg -3'
miRNA:   3'- -GCGGCCG-----AGCUgUCU-------------UGCGuUAGCCg -5'
8040 5' -55.5 NC_001973.1 + 122585 0.69 0.806821
Target:  5'- gCGCCGGUccgaaucuuugcugCGGCGGAG-GCG-UCGGCg -3'
miRNA:   3'- -GCGGCCGa-------------GCUGUCUUgCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 121652 0.7 0.747973
Target:  5'- gCGCCGcCUCGA-AGGGCGCGucgcucgCGGCg -3'
miRNA:   3'- -GCGGCcGAGCUgUCUUGCGUua-----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 121325 0.7 0.794415
Target:  5'- gCGCCGacgaGCUcacCGACAGGcgguCGCGGUCGuGCg -3'
miRNA:   3'- -GCGGC----CGA---GCUGUCUu---GCGUUAGC-CG- -5'
8040 5' -55.5 NC_001973.1 + 118429 0.78 0.37521
Target:  5'- cCGCCgGGCUCGAC-GAGCGCAAgcgcgacaaaUGGCg -3'
miRNA:   3'- -GCGG-CCGAGCUGuCUUGCGUUa---------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 118041 0.67 0.896032
Target:  5'- gCGCCGuucguGCUgcacUGGCAGGACGC---CGGCg -3'
miRNA:   3'- -GCGGC-----CGA----GCUGUCUUGCGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 114843 0.66 0.944596
Target:  5'- cCGCCGaGCUCGAguuuGgGCAugaucucAUCGGCu -3'
miRNA:   3'- -GCGGC-CGAGCUgucuUgCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 114689 0.67 0.908551
Target:  5'- cCGCCGaGCUCGAguuuGGGCGUGAugucaUCGGg -3'
miRNA:   3'- -GCGGC-CGAGCUgu--CUUGCGUU-----AGCCg -5'
8040 5' -55.5 NC_001973.1 + 114611 0.67 0.888759
Target:  5'- cCGCCGaGCUCaaguuaaGGCAuGAUGUcAUCGGCu -3'
miRNA:   3'- -GCGGC-CGAG-------CUGUcUUGCGuUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.