miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 114331 0.66 0.935782
Target:  5'- uCGuCCGGCUCGcgAGcACGCAcacgAUcCGGCu -3'
miRNA:   3'- -GC-GGCCGAGCugUCuUGCGU----UA-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 113954 0.68 0.853186
Target:  5'- aGCCGGCUCGcgAGcACGCAAUaaGUc -3'
miRNA:   3'- gCGGCCGAGCugUCuUGCGUUAgcCG- -5'
8040 5' -55.5 NC_001973.1 + 113898 0.69 0.837271
Target:  5'- aGCCGGCUCGcgagcACGGcACGCAAa-GGa -3'
miRNA:   3'- gCGGCCGAGC-----UGUCuUGCGUUagCCg -5'
8040 5' -55.5 NC_001973.1 + 112677 0.66 0.945475
Target:  5'- aGCUGGCcgUUGGCGccgucguaaaagucuAGCGUGAUCGGCg -3'
miRNA:   3'- gCGGCCG--AGCUGUc--------------UUGCGUUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 112113 0.67 0.901779
Target:  5'- uCGCCGGCaaccggUgGACGGAGgggcUGCAGUucgugcgCGGCa -3'
miRNA:   3'- -GCGGCCG------AgCUGUCUU----GCGUUA-------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 111745 0.7 0.766911
Target:  5'- cCGUCaGCUCGACGGAcgaccuGCGCGGcgucagaucugCGGCa -3'
miRNA:   3'- -GCGGcCGAGCUGUCU------UGCGUUa----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 111495 0.72 0.668941
Target:  5'- gCGCCGGCgcgCGACAacuGCGCcg-CGGUc -3'
miRNA:   3'- -GCGGCCGa--GCUGUcu-UGCGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 110354 0.69 0.820625
Target:  5'- uCGCCGcCUCGGCGGccGCGuCGGaCGGCg -3'
miRNA:   3'- -GCGGCcGAGCUGUCu-UGC-GUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 109856 0.72 0.658839
Target:  5'- uCGCCGccGC-CGACgAGGACGCGGcgcgCGGCg -3'
miRNA:   3'- -GCGGC--CGaGCUG-UCUUGCGUUa---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 107321 0.66 0.945037
Target:  5'- uGCUGGCgcgccuggaaGGCGGAGCGCGcacGUccacgcccccCGGCg -3'
miRNA:   3'- gCGGCCGag--------CUGUCUUGCGU---UA----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 107115 0.67 0.920146
Target:  5'- cCGCCGGCUgucgCGAUAcGACGCGAgCGa- -3'
miRNA:   3'- -GCGGCCGA----GCUGUcUUGCGUUaGCcg -5'
8040 5' -55.5 NC_001973.1 + 106882 0.69 0.845324
Target:  5'- gCGCCGGC-CGAaccguGCGCg--CGGCa -3'
miRNA:   3'- -GCGGCCGaGCUgucu-UGCGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 106581 0.68 0.871241
Target:  5'- gCGCCaaGCUCGGCgccgccgucaagcgaAcGAGCGCGAcCGGCg -3'
miRNA:   3'- -GCGGc-CGAGCUG---------------U-CUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 106014 0.67 0.920146
Target:  5'- gGCCGGUUCGcauCAGAcACGaauaAAaCGGCc -3'
miRNA:   3'- gCGGCCGAGCu--GUCU-UGCg---UUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 105343 0.66 0.925593
Target:  5'- uCGCCGuguuguuCUCGACGaagcGGCGCGgaggcGUCGGCg -3'
miRNA:   3'- -GCGGCc------GAGCUGUc---UUGCGU-----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 104169 0.71 0.699036
Target:  5'- gGCCGGC-CGAa--AACGCAAgCGGCc -3'
miRNA:   3'- gCGGCCGaGCUgucUUGCGUUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 103909 0.72 0.658839
Target:  5'- cCGCCgcGGCgCGACgaGGAGCGCGucgucgCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUG--UCUUGCGUua----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 101192 0.67 0.896032
Target:  5'- gCGCCGGg-CGAaauuGGcGCGCGggCGGCg -3'
miRNA:   3'- -GCGGCCgaGCUg---UCuUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 98336 0.7 0.776209
Target:  5'- aCGCUGcaGCggCGGCGGcGCGCGuUCGGCc -3'
miRNA:   3'- -GCGGC--CGa-GCUGUCuUGCGUuAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 98078 0.7 0.794415
Target:  5'- aGCCGcGCUCGuacCGGuAGCGCAccGUCaaGGCg -3'
miRNA:   3'- gCGGC-CGAGCu--GUC-UUGCGU--UAG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.