miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 114843 0.66 0.944596
Target:  5'- cCGCCGaGCUCGAguuuGgGCAugaucucAUCGGCu -3'
miRNA:   3'- -GCGGC-CGAGCUgucuUgCGU-------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 107321 0.66 0.945037
Target:  5'- uGCUGGCgcgccuggaaGGCGGAGCGCGcacGUccacgcccccCGGCg -3'
miRNA:   3'- gCGGCCGag--------CUGUCUUGCGU---UA----------GCCG- -5'
8040 5' -55.5 NC_001973.1 + 42868 0.66 0.945037
Target:  5'- uGUCGaGCgagCGGCGGcGCGUGAUCuGCa -3'
miRNA:   3'- gCGGC-CGa--GCUGUCuUGCGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 138627 0.66 0.945037
Target:  5'- uGCaCGGCUgCGcCA--GCGCGggCGGCa -3'
miRNA:   3'- gCG-GCCGA-GCuGUcuUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 81779 0.66 0.945037
Target:  5'- uGUCGcGCUCGGCGcGAAagugcacggcCGCGGUgucCGGCg -3'
miRNA:   3'- gCGGC-CGAGCUGU-CUU----------GCGUUA---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 114331 0.66 0.935782
Target:  5'- uCGuCCGGCUCGcgAGcACGCAcacgAUcCGGCu -3'
miRNA:   3'- -GC-GGCCGAGCugUCuUGCGU----UA-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 134101 0.66 0.935782
Target:  5'- gGCCaGGUUCGGCGGcACGUAgaaGUCGuCg -3'
miRNA:   3'- gCGG-CCGAGCUGUCuUGCGU---UAGCcG- -5'
8040 5' -55.5 NC_001973.1 + 107115 0.67 0.920146
Target:  5'- cCGCCGGCUgucgCGAUAcGACGCGAgCGa- -3'
miRNA:   3'- -GCGGCCGA----GCUGUcUUGCGUUaGCcg -5'
8040 5' -55.5 NC_001973.1 + 141125 0.67 0.920146
Target:  5'- aCGCCGGCUCGACGc-ACGUGAaauUCa-- -3'
miRNA:   3'- -GCGGCCGAGCUGUcuUGCGUU---AGccg -5'
8040 5' -55.5 NC_001973.1 + 60267 0.66 0.923983
Target:  5'- cCGCCGcGCUCGACuucaacaacaucaaAACGCucaaguugacguUCGGCa -3'
miRNA:   3'- -GCGGC-CGAGCUGuc------------UUGCGuu----------AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 1234 0.66 0.925593
Target:  5'- cCGCCcaaGGCUCcgcGCAaGGCGCcGUCGGUu -3'
miRNA:   3'- -GCGG---CCGAGc--UGUcUUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 75592 0.66 0.925593
Target:  5'- aGCgGGCggagCgGGCGGAGCGgCAAUCGa- -3'
miRNA:   3'- gCGgCCGa---G-CUGUCUUGC-GUUAGCcg -5'
8040 5' -55.5 NC_001973.1 + 12521 0.66 0.925593
Target:  5'- gGCCGGCUCaaauuGAACGguAUCGuCa -3'
miRNA:   3'- gCGGCCGAGcugu-CUUGCguUAGCcG- -5'
8040 5' -55.5 NC_001973.1 + 8785 0.66 0.925593
Target:  5'- gGCCGaGCgucaacgCGACGGAAC-Ccg-CGGCg -3'
miRNA:   3'- gCGGC-CGa------GCUGUCUUGcGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 105343 0.66 0.925593
Target:  5'- uCGCCGuguuguuCUCGACGaagcGGCGCGgaggcGUCGGCg -3'
miRNA:   3'- -GCGGCc------GAGCUGUc---UUGCGU-----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 133458 0.66 0.925593
Target:  5'- gCGCgCGGgUCGcgcACGGAGCGCcagCGGg -3'
miRNA:   3'- -GCG-GCCgAGC---UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 7863 0.66 0.930805
Target:  5'- aGCUGGCgCGcCAGGGCGCGuUUuGCa -3'
miRNA:   3'- gCGGCCGaGCuGUCUUGCGUuAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 10993 0.66 0.930805
Target:  5'- gCGCUGGCguucUUGGCuauGAugGCGAccUGGCg -3'
miRNA:   3'- -GCGGCCG----AGCUGu--CUugCGUUa-GCCG- -5'
8040 5' -55.5 NC_001973.1 + 151927 0.66 0.930805
Target:  5'- aGCCGGC--GGCAGGcgucgACGCAGUCcucccGCa -3'
miRNA:   3'- gCGGCCGagCUGUCU-----UGCGUUAGc----CG- -5'
8040 5' -55.5 NC_001973.1 + 124212 0.66 0.935782
Target:  5'- gCGCCGGCUCGugAc--CGacuaCGGCc -3'
miRNA:   3'- -GCGGCCGAGCugUcuuGCguuaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.