miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8040 5' -55.5 NC_001973.1 + 7863 0.66 0.930805
Target:  5'- aGCUGGCgCGcCAGGGCGCGuUUuGCa -3'
miRNA:   3'- gCGGCCGaGCuGUCUUGCGUuAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 133458 0.66 0.925593
Target:  5'- gCGCgCGGgUCGcgcACGGAGCGCcagCGGg -3'
miRNA:   3'- -GCG-GCCgAGC---UGUCUUGCGuuaGCCg -5'
8040 5' -55.5 NC_001973.1 + 31928 0.67 0.920146
Target:  5'- uGCCGGUUgGACgcgcGGAAagGCGAUCaGCc -3'
miRNA:   3'- gCGGCCGAgCUG----UCUUg-CGUUAGcCG- -5'
8040 5' -55.5 NC_001973.1 + 75511 0.67 0.919589
Target:  5'- gGCCGuCUCGcACGGAgauucgaACGCGGacagCGGCu -3'
miRNA:   3'- gCGGCcGAGC-UGUCU-------UGCGUUa---GCCG- -5'
8040 5' -55.5 NC_001973.1 + 68382 0.67 0.916194
Target:  5'- gGCCGGCaagUCGcccagguACAGGuagaucgugcgcucgGCGCGcucGUCGGCc -3'
miRNA:   3'- gCGGCCG---AGC-------UGUCU---------------UGCGU---UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 25805 0.67 0.914465
Target:  5'- -aCCGGCgcgCGGCAcaccACGCAagcguccaccauGUCGGCg -3'
miRNA:   3'- gcGGCCGa--GCUGUcu--UGCGU------------UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8631 0.67 0.914465
Target:  5'- cCGCCgaGGC-CGACgAGAaacgccaacgugACGCuguUCGGCg -3'
miRNA:   3'- -GCGG--CCGaGCUG-UCU------------UGCGuu-AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 139436 0.67 0.914465
Target:  5'- -aCCGGC-CuGCAGGAUGCcgauagacaGAUCGGCc -3'
miRNA:   3'- gcGGCCGaGcUGUCUUGCG---------UUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 81821 0.67 0.914465
Target:  5'- cCGCCGGCggCGACGaGACGaCGAgcucaGGUc -3'
miRNA:   3'- -GCGGCCGa-GCUGUcUUGC-GUUag---CCG- -5'
8040 5' -55.5 NC_001973.1 + 69406 0.67 0.914465
Target:  5'- gCGCCGugUCGG-AGGACGCAucCGGCg -3'
miRNA:   3'- -GCGGCcgAGCUgUCUUGCGUuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 106014 0.67 0.920146
Target:  5'- gGCCGGUUCGcauCAGAcACGaauaAAaCGGCc -3'
miRNA:   3'- gCGGCCGAGCu--GUCU-UGCg---UUaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 144733 0.67 0.920146
Target:  5'- gCGCCaGGCggCGGCGGAGgCGgcCGAggaggCGGCg -3'
miRNA:   3'- -GCGG-CCGa-GCUGUCUU-GC--GUUa----GCCG- -5'
8040 5' -55.5 NC_001973.1 + 105343 0.66 0.925593
Target:  5'- uCGCCGuguuguuCUCGACGaagcGGCGCGgaggcGUCGGCg -3'
miRNA:   3'- -GCGGCc------GAGCUGUc---UUGCGU-----UAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 8785 0.66 0.925593
Target:  5'- gGCCGaGCgucaacgCGACGGAAC-Ccg-CGGCg -3'
miRNA:   3'- gCGGC-CGa------GCUGUCUUGcGuuaGCCG- -5'
8040 5' -55.5 NC_001973.1 + 12521 0.66 0.925593
Target:  5'- gGCCGGCUCaaauuGAACGguAUCGuCa -3'
miRNA:   3'- gCGGCCGAGcugu-CUUGCguUAGCcG- -5'
8040 5' -55.5 NC_001973.1 + 75592 0.66 0.925593
Target:  5'- aGCgGGCggagCgGGCGGAGCGgCAAUCGa- -3'
miRNA:   3'- gCGgCCGa---G-CUGUCUUGC-GUUAGCcg -5'
8040 5' -55.5 NC_001973.1 + 1234 0.66 0.925593
Target:  5'- cCGCCcaaGGCUCcgcGCAaGGCGCcGUCGGUu -3'
miRNA:   3'- -GCGG---CCGAGc--UGUcUUGCGuUAGCCG- -5'
8040 5' -55.5 NC_001973.1 + 60267 0.66 0.923983
Target:  5'- cCGCCGcGCUCGACuucaacaacaucaaAACGCucaaguugacguUCGGCa -3'
miRNA:   3'- -GCGGC-CGAGCUGuc------------UUGCGuu----------AGCCG- -5'
8040 5' -55.5 NC_001973.1 + 141125 0.67 0.920146
Target:  5'- aCGCCGGCUCGACGc-ACGUGAaauUCa-- -3'
miRNA:   3'- -GCGGCCGAGCUGUcuUGCGUU---AGccg -5'
8040 5' -55.5 NC_001973.1 + 107115 0.67 0.920146
Target:  5'- cCGCCGGCUgucgCGAUAcGACGCGAgCGa- -3'
miRNA:   3'- -GCGGCCGA----GCUGUcUUGCGUUaGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.