Results 101 - 120 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 112113 | 0.67 | 0.901779 |
Target: 5'- uCGCCGGCaaccggUgGACGGAGgggcUGCAGUucgugcgCGGCa -3' miRNA: 3'- -GCGGCCG------AgCUGUCUU----GCGUUA-------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 2679 | 0.67 | 0.901779 |
Target: 5'- aGCuCGaGCUCGGCc-GACGCGuaaaaucuuacgcGUCGGCc -3' miRNA: 3'- gCG-GC-CGAGCUGucUUGCGU-------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 130617 | 0.67 | 0.901149 |
Target: 5'- -aCCGaGCUCGGCGGAcGCGUAGgauuuuacgugcCGGCa -3' miRNA: 3'- gcGGC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 101192 | 0.67 | 0.896032 |
Target: 5'- gCGCCGGg-CGAaauuGGcGCGCGggCGGCg -3' miRNA: 3'- -GCGGCCgaGCUg---UCuUGCGUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 30493 | 0.67 | 0.896032 |
Target: 5'- aGUCgGGCaCGACGGuGCGCAGggCGGUu -3' miRNA: 3'- gCGG-CCGaGCUGUCuUGCGUUa-GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 87097 | 0.67 | 0.908551 |
Target: 5'- uGCCGuGC-CGGCAcGuguGCGCGugcgCGGCg -3' miRNA: 3'- gCGGC-CGaGCUGU-Cu--UGCGUua--GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 159483 | 0.67 | 0.908551 |
Target: 5'- aCGCCGGUccUUGgaACAGAgGCGC-GUCGGg -3' miRNA: 3'- -GCGGCCG--AGC--UGUCU-UGCGuUAGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 31928 | 0.67 | 0.920146 |
Target: 5'- uGCCGGUUgGACgcgcGGAAagGCGAUCaGCc -3' miRNA: 3'- gCGGCCGAgCUG----UCUUg-CGUUAGcCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 75511 | 0.67 | 0.919589 |
Target: 5'- gGCCGuCUCGcACGGAgauucgaACGCGGacagCGGCu -3' miRNA: 3'- gCGGCcGAGC-UGUCU-------UGCGUUa---GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 68382 | 0.67 | 0.916194 |
Target: 5'- gGCCGGCaagUCGcccagguACAGGuagaucgugcgcucgGCGCGcucGUCGGCc -3' miRNA: 3'- gCGGCCG---AGC-------UGUCU---------------UGCGU---UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 25805 | 0.67 | 0.914465 |
Target: 5'- -aCCGGCgcgCGGCAcaccACGCAagcguccaccauGUCGGCg -3' miRNA: 3'- gcGGCCGa--GCUGUcu--UGCGU------------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 8631 | 0.67 | 0.914465 |
Target: 5'- cCGCCgaGGC-CGACgAGAaacgccaacgugACGCuguUCGGCg -3' miRNA: 3'- -GCGG--CCGaGCUG-UCU------------UGCGuu-AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 139436 | 0.67 | 0.914465 |
Target: 5'- -aCCGGC-CuGCAGGAUGCcgauagacaGAUCGGCc -3' miRNA: 3'- gcGGCCGaGcUGUCUUGCG---------UUAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 81821 | 0.67 | 0.914465 |
Target: 5'- cCGCCGGCggCGACGaGACGaCGAgcucaGGUc -3' miRNA: 3'- -GCGGCCGa-GCUGUcUUGC-GUUag---CCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 69406 | 0.67 | 0.914465 |
Target: 5'- gCGCCGugUCGG-AGGACGCAucCGGCg -3' miRNA: 3'- -GCGGCcgAGCUgUCUUGCGUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 31724 | 0.67 | 0.914465 |
Target: 5'- uGCCGuuGCgCGACAGcAGCGCcgGGUgGGCc -3' miRNA: 3'- gCGGC--CGaGCUGUC-UUGCG--UUAgCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 124798 | 0.67 | 0.913884 |
Target: 5'- cCGCCGGCgagggccggggccUCGAUcGGACGguCGAggaguUCGGCa -3' miRNA: 3'- -GCGGCCG-------------AGCUGuCUUGC--GUU-----AGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 67625 | 0.67 | 0.912715 |
Target: 5'- uGCCGGCcgCGuCcgAGAgcgugccgaggaacACGCAGUUGGUg -3' miRNA: 3'- gCGGCCGa-GCuG--UCU--------------UGCGUUAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 52161 | 0.67 | 0.909153 |
Target: 5'- aGCCGGUgggcgccguacuuggCGAC-GAGCGCGgcgggGUCGcGCg -3' miRNA: 3'- gCGGCCGa--------------GCUGuCUUGCGU-----UAGC-CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 114689 | 0.67 | 0.908551 |
Target: 5'- cCGCCGaGCUCGAguuuGGGCGUGAugucaUCGGg -3' miRNA: 3'- -GCGGC-CGAGCUgu--CUUGCGUU-----AGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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