Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8040 | 5' | -55.5 | NC_001973.1 | + | 133458 | 0.66 | 0.925593 |
Target: 5'- gCGCgCGGgUCGcgcACGGAGCGCcagCGGg -3' miRNA: 3'- -GCG-GCCgAGC---UGUCUUGCGuuaGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 7863 | 0.66 | 0.930805 |
Target: 5'- aGCUGGCgCGcCAGGGCGCGuUUuGCa -3' miRNA: 3'- gCGGCCGaGCuGUCUUGCGUuAGcCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 96758 | 0.66 | 0.940525 |
Target: 5'- gCGCCGGCgagUCgGGCGGcGugGCGGccaacgCGGCc -3' miRNA: 3'- -GCGGCCG---AG-CUGUC-UugCGUUa-----GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 35139 | 0.66 | 0.940525 |
Target: 5'- cCGCCGGCgacaGGCcccgcuuGAugGCGAcgcUGGCg -3' miRNA: 3'- -GCGGCCGag--CUGu------CUugCGUUa--GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 72206 | 0.66 | 0.944153 |
Target: 5'- aGuuGaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCc -3' miRNA: 3'- gCggC-CGAGCUGUCU-UGCGUUa-----------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 114843 | 0.66 | 0.944596 |
Target: 5'- cCGCCGaGCUCGAguuuGgGCAugaucucAUCGGCu -3' miRNA: 3'- -GCGGC-CGAGCUgucuUgCGU-------UAGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 107321 | 0.66 | 0.945037 |
Target: 5'- uGCUGGCgcgccuggaaGGCGGAGCGCGcacGUccacgcccccCGGCg -3' miRNA: 3'- gCGGCCGag--------CUGUCUUGCGU---UA----------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 42868 | 0.66 | 0.945037 |
Target: 5'- uGUCGaGCgagCGGCGGcGCGUGAUCuGCa -3' miRNA: 3'- gCGGC-CGa--GCUGUCuUGCGUUAGcCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 138627 | 0.66 | 0.945037 |
Target: 5'- uGCaCGGCUgCGcCA--GCGCGggCGGCa -3' miRNA: 3'- gCG-GCCGA-GCuGUcuUGCGUuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 81779 | 0.66 | 0.945037 |
Target: 5'- uGUCGcGCUCGGCGcGAAagugcacggcCGCGGUgucCGGCg -3' miRNA: 3'- gCGGC-CGAGCUGU-CUU----------GCGUUA---GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 47803 | 0.66 | 0.940525 |
Target: 5'- gCGCCGGC-CGACGcguGCGCcaAAUCGcccGCc -3' miRNA: 3'- -GCGGCCGaGCUGUcu-UGCG--UUAGC---CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 32302 | 0.66 | 0.940525 |
Target: 5'- aCGCCaGCUCGucguucagauACAGGGCGUccgCGGg -3' miRNA: 3'- -GCGGcCGAGC----------UGUCUUGCGuuaGCCg -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 10993 | 0.66 | 0.930805 |
Target: 5'- gCGCUGGCguucUUGGCuauGAugGCGAccUGGCg -3' miRNA: 3'- -GCGGCCG----AGCUGu--CUugCGUUa-GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 151927 | 0.66 | 0.930805 |
Target: 5'- aGCCGGC--GGCAGGcgucgACGCAGUCcucccGCa -3' miRNA: 3'- gCGGCCGagCUGUCU-----UGCGUUAGc----CG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 124212 | 0.66 | 0.935782 |
Target: 5'- gCGCCGGCUCGugAc--CGacuaCGGCc -3' miRNA: 3'- -GCGGCCGAGCugUcuuGCguuaGCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 134101 | 0.66 | 0.935782 |
Target: 5'- gGCCaGGUUCGGCGGcACGUAgaaGUCGuCg -3' miRNA: 3'- gCGG-CCGAGCUGUCuUGCGU---UAGCcG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 114331 | 0.66 | 0.935782 |
Target: 5'- uCGuCCGGCUCGcgAGcACGCAcacgAUcCGGCu -3' miRNA: 3'- -GC-GGCCGAGCugUCuUGCGU----UA-GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 26171 | 0.66 | 0.935782 |
Target: 5'- cCGCCGGC---GCGG-GCGCGucgaCGGCg -3' miRNA: 3'- -GCGGCCGagcUGUCuUGCGUua--GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 127347 | 0.66 | 0.939595 |
Target: 5'- aCGCCuaaacugaGCUCGGCGGAcGCGUAAgauuuuacgugcCGGCa -3' miRNA: 3'- -GCGGc-------CGAGCUGUCU-UGCGUUa-----------GCCG- -5' |
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8040 | 5' | -55.5 | NC_001973.1 | + | 145011 | 0.66 | 0.940525 |
Target: 5'- uGgCGGCUcCGGCGGcGCcCGAgugCGGCg -3' miRNA: 3'- gCgGCCGA-GCUGUCuUGcGUUa--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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