miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8041 5' -53.9 NC_001973.1 + 3992 0.66 0.964209
Target:  5'- ---cGCAcGCcgGAuaGGGGACGCGCUu -3'
miRNA:   3'- cucaUGU-CGuaCUcgUCUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 131166 0.66 0.964209
Target:  5'- aAGUggcACAGCGUcuGCAGuuucgaGGGCGUGCCc -3'
miRNA:   3'- cUCA---UGUCGUAcuCGUC------UCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 105959 0.66 0.964209
Target:  5'- aGGUGCAcGUAggcGAGCAGguuGGugGCGUUg -3'
miRNA:   3'- cUCAUGU-CGUa--CUCGUC---UCugCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 103967 0.66 0.964209
Target:  5'- ---aGCAGCcu-AGCcGGGGCGUGCCg -3'
miRNA:   3'- cucaUGUCGuacUCGuCUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 79903 0.66 0.964209
Target:  5'- gGGGUcgaACAGCuUGAGCGG-GAa-CGCCu -3'
miRNA:   3'- -CUCA---UGUCGuACUCGUCuCUgcGCGG- -5'
8041 5' -53.9 NC_001973.1 + 43598 0.66 0.960721
Target:  5'- cGGGUugGGCGUGuuGUAGuGcuugGCGCCg -3'
miRNA:   3'- -CUCAugUCGUACu-CGUCuCug--CGCGG- -5'
8041 5' -53.9 NC_001973.1 + 96765 0.66 0.957004
Target:  5'- cGAGUcggGCGGCGUG-GCGGccaACGCgGCCc -3'
miRNA:   3'- -CUCA---UGUCGUACuCGUCuc-UGCG-CGG- -5'
8041 5' -53.9 NC_001973.1 + 53408 0.66 0.957004
Target:  5'- ----cCGGCAcGGGCGGAGcgccggGCGCGUCg -3'
miRNA:   3'- cucauGUCGUaCUCGUCUC------UGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 87112 0.66 0.957004
Target:  5'- -uGUGC-GCGUGcGCGGcGugcGCGCGCCg -3'
miRNA:   3'- cuCAUGuCGUACuCGUCuC---UGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 61658 0.66 0.95662
Target:  5'- cGAGaGCAGC-UG-GCAGGGACagucgcgGCGCg -3'
miRNA:   3'- -CUCaUGUCGuACuCGUCUCUG-------CGCGg -5'
8041 5' -53.9 NC_001973.1 + 4205 0.66 0.953055
Target:  5'- gGAGgu--GCAUGcGCuGGaAGGCGCGCCu -3'
miRNA:   3'- -CUCauguCGUACuCG-UC-UCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 135515 0.66 0.953055
Target:  5'- ---gACGGCGa----AGAGACGCGCCa -3'
miRNA:   3'- cucaUGUCGUacucgUCUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 55944 0.66 0.952647
Target:  5'- uAGUACGGacucGGGCccguucugucgggAGAGGCGCGCg -3'
miRNA:   3'- cUCAUGUCgua-CUCG-------------UCUCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 117880 0.66 0.948868
Target:  5'- uGAGgcacACgAGCcgGAGCGucGACGCGaCCa -3'
miRNA:   3'- -CUCa---UG-UCGuaCUCGUcuCUGCGC-GG- -5'
8041 5' -53.9 NC_001973.1 + 22965 0.66 0.948868
Target:  5'- cGAGUAC-GC----GCGGcGGCGCGCCg -3'
miRNA:   3'- -CUCAUGuCGuacuCGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 136701 0.66 0.944441
Target:  5'- -cGUugGGCGccuuuUGGGCGaGGAUGCGCg -3'
miRNA:   3'- cuCAugUCGU-----ACUCGUcUCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 118111 0.66 0.944441
Target:  5'- uGGGcGCGGCGcucaAGCAGGuGGCGCGCg -3'
miRNA:   3'- -CUCaUGUCGUac--UCGUCU-CUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 144730 0.66 0.944441
Target:  5'- cGAGcGCcaGGCGgcGGCGGAGGCG-GCCg -3'
miRNA:   3'- -CUCaUG--UCGUacUCGUCUCUGCgCGG- -5'
8041 5' -53.9 NC_001973.1 + 24100 0.67 0.941668
Target:  5'- cGAGgucgACGGCGacgugucgcUGAGCcGGGcgagcucgcgggugcGCGCGCCg -3'
miRNA:   3'- -CUCa---UGUCGU---------ACUCGuCUC---------------UGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 23565 0.67 0.939771
Target:  5'- ---cGCAGCcgGccGGC--GGACGCGCCg -3'
miRNA:   3'- cucaUGUCGuaC--UCGucUCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.