miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8041 5' -53.9 NC_001973.1 + 36143 0.77 0.428247
Target:  5'- -uGUACGGCAUGGGCA---GCGCGCUg -3'
miRNA:   3'- cuCAUGUCGUACUCGUcucUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 22071 0.77 0.437358
Target:  5'- ---gGCGGCGUGuGCGGAG-UGCGCCg -3'
miRNA:   3'- cucaUGUCGUACuCGUCUCuGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 78188 0.72 0.688886
Target:  5'- uGGGcACgGGCAUGcGCAucaacGAGGCGCGCCa -3'
miRNA:   3'- -CUCaUG-UCGUACuCGU-----CUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 74785 0.72 0.697101
Target:  5'- uGGUGCGGUcgccgggGUGGGCGcgcacgcGAGGCGCGUCg -3'
miRNA:   3'- cUCAUGUCG-------UACUCGU-------CUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 145030 0.72 0.719492
Target:  5'- cGAGUGCGGCGcGAGCGcGucgaGCGCCg -3'
miRNA:   3'- -CUCAUGUCGUaCUCGU-CucugCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 94759 0.71 0.759167
Target:  5'- cGAGcgGCGGCA--AGCAcGAGAUGCGCg -3'
miRNA:   3'- -CUCa-UGUCGUacUCGU-CUCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 6412 0.71 0.768819
Target:  5'- cGAGUGC-GC---GGCGGcGGCGCGCCg -3'
miRNA:   3'- -CUCAUGuCGuacUCGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 6501 0.71 0.768819
Target:  5'- -uGUAcCGGC-UGGGCGGcgcGGGCGUGCCg -3'
miRNA:   3'- cuCAU-GUCGuACUCGUC---UCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 39167 0.7 0.796979
Target:  5'- cGAGUGCAGaugacuCAUGAGCgacacgcucAGcAGGgGCGCCa -3'
miRNA:   3'- -CUCAUGUC------GUACUCG---------UC-UCUgCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 91711 0.7 0.814997
Target:  5'- aGGGUGCucGGuCAUGGGCGGAacGACGCGaUCu -3'
miRNA:   3'- -CUCAUG--UC-GUACUCGUCU--CUGCGC-GG- -5'
8041 5' -53.9 NC_001973.1 + 28959 0.7 0.823752
Target:  5'- gGGGgcCGGCAgucGGGCGGcGACGCGUUg -3'
miRNA:   3'- -CUCauGUCGUa--CUCGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 82297 0.7 0.823752
Target:  5'- uGGUGCAGUugcgAUG-GCAG-GugGCGCUg -3'
miRNA:   3'- cUCAUGUCG----UACuCGUCuCugCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 52467 0.7 0.832326
Target:  5'- uGGGUuuguuGCAGCAgauccauugUGAG-AGAGcGCGCGCCg -3'
miRNA:   3'- -CUCA-----UGUCGU---------ACUCgUCUC-UGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 110063 0.7 0.832326
Target:  5'- -uGUACAGCAac-GUGGAgGACGCGCUg -3'
miRNA:   3'- cuCAUGUCGUacuCGUCU-CUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 123003 0.69 0.840712
Target:  5'- -cGgcCAGCAUGAGCGccucgaaGGGCGcCGCCa -3'
miRNA:   3'- cuCauGUCGUACUCGUc------UCUGC-GCGG- -5'
8041 5' -53.9 NC_001973.1 + 95721 0.69 0.848901
Target:  5'- cGGUGCgccGGCuguUGGcGCAG-GGCGCGCCc -3'
miRNA:   3'- cUCAUG---UCGu--ACU-CGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 96296 0.69 0.864661
Target:  5'- cGAGUugAGCAUGucggucAGCAcguuGAGGauggUGCGCCu -3'
miRNA:   3'- -CUCAugUCGUAC------UCGU----CUCU----GCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 5055 0.69 0.872218
Target:  5'- aAGcGCAGCGUcaAGCgGGGGACGCGCg -3'
miRNA:   3'- cUCaUGUCGUAc-UCG-UCUCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 105683 0.69 0.877376
Target:  5'- cGAGU-CGGuCGUGAGCggcacgcugaacacGGAGAC-CGCCu -3'
miRNA:   3'- -CUCAuGUC-GUACUCG--------------UCUCUGcGCGG- -5'
8041 5' -53.9 NC_001973.1 + 118150 0.69 0.879553
Target:  5'- -cGUuuuGCGUGAagcuGCAGcgcGGACGCGCCg -3'
miRNA:   3'- cuCAuguCGUACU----CGUC---UCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.