miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8041 5' -53.9 NC_001973.1 + 53440 0.67 0.93929
Target:  5'- cAGUACAccagcacGCAcGGGUAGcGGCGCGCg -3'
miRNA:   3'- cUCAUGU-------CGUaCUCGUCuCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 50084 0.67 0.929691
Target:  5'- cGAGggGCGGCGgcgccacggaGGGCGGcGGCGcCGCCg -3'
miRNA:   3'- -CUCa-UGUCGUa---------CUCGUCuCUGC-GCGG- -5'
8041 5' -53.9 NC_001973.1 + 136568 0.67 0.929691
Target:  5'- aAGUcCAGCAUG-GCGcu-GCGCGCCg -3'
miRNA:   3'- cUCAuGUCGUACuCGUcucUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 61039 0.67 0.929161
Target:  5'- gGAGUuacacugcgcgacGCAGCAgcAGCGGGGGCGgGUa -3'
miRNA:   3'- -CUCA-------------UGUCGUacUCGUCUCUGCgCGg -5'
8041 5' -53.9 NC_001973.1 + 123040 0.67 0.924279
Target:  5'- cGAGUcCAGUcUGucgaccGGCAcGGGACGCGCUc -3'
miRNA:   3'- -CUCAuGUCGuAC------UCGU-CUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 132542 0.67 0.91862
Target:  5'- cGGGcGCGGCGgcgGgcucgagcgcGGCGGuguGGCGCGCCg -3'
miRNA:   3'- -CUCaUGUCGUa--C----------UCGUCu--CUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 101128 0.68 0.915106
Target:  5'- -uGUACAGCAgauagcucguguugGAGCuGAGcacgaGCGCGCa -3'
miRNA:   3'- cuCAUGUCGUa-------------CUCGuCUC-----UGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 9075 0.68 0.912714
Target:  5'- -uGUGCAGCcugucgcgccgcGUGAGCuc-GGCGCGCa -3'
miRNA:   3'- cuCAUGUCG------------UACUCGucuCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 95868 0.68 0.900167
Target:  5'- gGAGgACGGCGUGGucgacuaccGC-GAGcuGCGCGCCg -3'
miRNA:   3'- -CUCaUGUCGUACU---------CGuCUC--UGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 131875 0.68 0.900167
Target:  5'- --aUGCGGCA--GGCAcAGACGCGCUc -3'
miRNA:   3'- cucAUGUCGUacUCGUcUCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 30402 0.68 0.900167
Target:  5'- ---gGCGGCGgcGGCGGAGGCGcCGCg -3'
miRNA:   3'- cucaUGUCGUacUCGUCUCUGC-GCGg -5'
8041 5' -53.9 NC_001973.1 + 38989 0.68 0.893532
Target:  5'- ---gACGGCgGUGcGCAGucGCGCGCCg -3'
miRNA:   3'- cucaUGUCG-UACuCGUCucUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 123101 0.68 0.886659
Target:  5'- aGGUACAGC---GGCAGGuugucGGCGCGCg -3'
miRNA:   3'- cUCAUGUCGuacUCGUCU-----CUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 58724 0.68 0.886659
Target:  5'- aAGU-CGGCcgacuuUGuGCAGcGGCGCGCCg -3'
miRNA:   3'- cUCAuGUCGu-----ACuCGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 118150 0.69 0.879553
Target:  5'- -cGUuuuGCGUGAagcuGCAGcgcGGACGCGCCg -3'
miRNA:   3'- cuCAuguCGUACU----CGUC---UCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 105683 0.69 0.877376
Target:  5'- cGAGU-CGGuCGUGAGCggcacgcugaacacGGAGAC-CGCCu -3'
miRNA:   3'- -CUCAuGUC-GUACUCG--------------UCUCUGcGCGG- -5'
8041 5' -53.9 NC_001973.1 + 5055 0.69 0.872218
Target:  5'- aAGcGCAGCGUcaAGCgGGGGACGCGCg -3'
miRNA:   3'- cUCaUGUCGUAc-UCG-UCUCUGCGCGg -5'
8041 5' -53.9 NC_001973.1 + 96296 0.69 0.864661
Target:  5'- cGAGUugAGCAUGucggucAGCAcguuGAGGauggUGCGCCu -3'
miRNA:   3'- -CUCAugUCGUAC------UCGU----CUCU----GCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 95721 0.69 0.848901
Target:  5'- cGGUGCgccGGCuguUGGcGCAG-GGCGCGCCc -3'
miRNA:   3'- cUCAUG---UCGu--ACU-CGUCuCUGCGCGG- -5'
8041 5' -53.9 NC_001973.1 + 123003 0.69 0.840712
Target:  5'- -cGgcCAGCAUGAGCGccucgaaGGGCGcCGCCa -3'
miRNA:   3'- cuCauGUCGUACUCGUc------UCUGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.