miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8042 3' -55.2 NC_001973.1 + 41062 0.66 0.936244
Target:  5'- gGGCUUGaacCCGAUCGAccccGGCCGGCGc- -3'
miRNA:   3'- -UCGAGC---GGUUGGCUua--CCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 143512 0.66 0.936244
Target:  5'- cGCUcaCGCCGGugacgcgcCCGAugcUGGCCGGC-UCg -3'
miRNA:   3'- uCGA--GCGGUU--------GGCUu--ACCGGCUGuAG- -5'
8042 3' -55.2 NC_001973.1 + 28932 0.66 0.936244
Target:  5'- gGGCUUGCacgCGGCUGGGgcggcagcgggGGCCGGCAgUCg -3'
miRNA:   3'- -UCGAGCG---GUUGGCUUa----------CCGGCUGU-AG- -5'
8042 3' -55.2 NC_001973.1 + 76218 0.66 0.931202
Target:  5'- gAGCcCGCUGACCGcgacgcggcGGCCGcCGUCu -3'
miRNA:   3'- -UCGaGCGGUUGGCuua------CCGGCuGUAG- -5'
8042 3' -55.2 NC_001973.1 + 53107 0.66 0.931202
Target:  5'- uAGCU-GUCGAacUCGAAgcGGCCGACGUUg -3'
miRNA:   3'- -UCGAgCGGUU--GGCUUa-CCGGCUGUAG- -5'
8042 3' -55.2 NC_001973.1 + 17439 0.66 0.931202
Target:  5'- cAGCUCGUUGccGCCGAAcGG-CGGCAUg -3'
miRNA:   3'- -UCGAGCGGU--UGGCUUaCCgGCUGUAg -5'
8042 3' -55.2 NC_001973.1 + 21499 0.66 0.925917
Target:  5'- cGGCcCGCCGACuCGAgguugcccagGUcGCCGACGUg -3'
miRNA:   3'- -UCGaGCGGUUG-GCU----------UAcCGGCUGUAg -5'
8042 3' -55.2 NC_001973.1 + 32551 0.66 0.925917
Target:  5'- cGGCgaUCGCCGccGCCGAc--GCCGcCGUCg -3'
miRNA:   3'- -UCG--AGCGGU--UGGCUuacCGGCuGUAG- -5'
8042 3' -55.2 NC_001973.1 + 121307 0.66 0.920389
Target:  5'- cGGCgcgCGCCGGCgGAcgcGCCGACGa- -3'
miRNA:   3'- -UCGa--GCGGUUGgCUuacCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 146015 0.66 0.920389
Target:  5'- gGGUcCGCCGGCuCGAGcgcgGGUCGACGg- -3'
miRNA:   3'- -UCGaGCGGUUG-GCUUa---CCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 87539 0.66 0.920389
Target:  5'- cGGCcggUGCCggUCGA--GGCCG-CAUCg -3'
miRNA:   3'- -UCGa--GCGGuuGGCUuaCCGGCuGUAG- -5'
8042 3' -55.2 NC_001973.1 + 92821 0.66 0.919823
Target:  5'- gGGCgUCGUCAugcCCGAcggaagcGUGGCCGugAa- -3'
miRNA:   3'- -UCG-AGCGGUu--GGCU-------UACCGGCugUag -5'
8042 3' -55.2 NC_001973.1 + 34342 0.66 0.914618
Target:  5'- gAGCUC-CCAGCgCGAGUcGGgCG-CGUCg -3'
miRNA:   3'- -UCGAGcGGUUG-GCUUA-CCgGCuGUAG- -5'
8042 3' -55.2 NC_001973.1 + 42025 0.66 0.914618
Target:  5'- cGGCgagCGUCGACC---UGGCCGAgGUg -3'
miRNA:   3'- -UCGa--GCGGUUGGcuuACCGGCUgUAg -5'
8042 3' -55.2 NC_001973.1 + 109354 0.66 0.914618
Target:  5'- cAGCUcCGCuCGGCCGuagcGGUCGACGa- -3'
miRNA:   3'- -UCGA-GCG-GUUGGCuua-CCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 36230 0.66 0.914618
Target:  5'- cGGuCUCGCCgGACgCGAGgcucgaGGCCGAUuUCg -3'
miRNA:   3'- -UC-GAGCGG-UUG-GCUUa-----CCGGCUGuAG- -5'
8042 3' -55.2 NC_001973.1 + 100520 0.66 0.91284
Target:  5'- uGGC-CGCCGugcugcguacggugAUCGuGGUGGCCGACGa- -3'
miRNA:   3'- -UCGaGCGGU--------------UGGC-UUACCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 89253 0.67 0.908607
Target:  5'- aGGCUCGUCGGCUGuAGUGGUcuucuCGGauaGUCg -3'
miRNA:   3'- -UCGAGCGGUUGGC-UUACCG-----GCUg--UAG- -5'
8042 3' -55.2 NC_001973.1 + 135629 0.67 0.908607
Target:  5'- gAGUUgGCCGGCaagCGGAUGGCCuACuUCa -3'
miRNA:   3'- -UCGAgCGGUUG---GCUUACCGGcUGuAG- -5'
8042 3' -55.2 NC_001973.1 + 1024 0.67 0.906135
Target:  5'- cGCgUCGCCGAaauaguauuuguaCGAcAUGGCCGAC-UCu -3'
miRNA:   3'- uCG-AGCGGUUg------------GCU-UACCGGCUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.