miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8042 3' -55.2 NC_001973.1 + 1024 0.67 0.906135
Target:  5'- cGCgUCGCCGAaauaguauuuguaCGAcAUGGCCGAC-UCu -3'
miRNA:   3'- uCG-AGCGGUUg------------GCU-UACCGGCUGuAG- -5'
8042 3' -55.2 NC_001973.1 + 1905 0.74 0.55136
Target:  5'- cGGUUUGCCAucugGCCGAucgucUGGuuGGCGUCg -3'
miRNA:   3'- -UCGAGCGGU----UGGCUu----ACCggCUGUAG- -5'
8042 3' -55.2 NC_001973.1 + 3198 0.72 0.65388
Target:  5'- cGCUCGCCAGCUcg--GGCUGAUcgCu -3'
miRNA:   3'- uCGAGCGGUUGGcuuaCCGGCUGuaG- -5'
8042 3' -55.2 NC_001973.1 + 3835 0.76 0.409226
Target:  5'- cGGCUCGCCGG-CGAuuugGGCCGGCucGUCg -3'
miRNA:   3'- -UCGAGCGGUUgGCUua--CCGGCUG--UAG- -5'
8042 3' -55.2 NC_001973.1 + 3883 0.68 0.863078
Target:  5'- cAGCUCGgCGACCGAGgcgucgcucUGcGCCGgguagacgggcgcgaACGUCg -3'
miRNA:   3'- -UCGAGCgGUUGGCUU---------AC-CGGC---------------UGUAG- -5'
8042 3' -55.2 NC_001973.1 + 4333 0.68 0.860008
Target:  5'- cGCUCGaCGACCucucggcGGCCGugAUCg -3'
miRNA:   3'- uCGAGCgGUUGGcuua---CCGGCugUAG- -5'
8042 3' -55.2 NC_001973.1 + 4935 0.7 0.734936
Target:  5'- gGGCUCGUC-GCCGAccGGCCGGu--- -3'
miRNA:   3'- -UCGAGCGGuUGGCUuaCCGGCUguag -5'
8042 3' -55.2 NC_001973.1 + 8611 0.68 0.835942
Target:  5'- cGGCcgCGCCGcggacgacgccGCCGA--GGCCGACGa- -3'
miRNA:   3'- -UCGa-GCGGU-----------UGGCUuaCCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 14001 0.68 0.844162
Target:  5'- uGGCUCuCCAacgACCG-GUGGCgggCGGCGUCg -3'
miRNA:   3'- -UCGAGcGGU---UGGCuUACCG---GCUGUAG- -5'
8042 3' -55.2 NC_001973.1 + 17439 0.66 0.931202
Target:  5'- cAGCUCGUUGccGCCGAAcGG-CGGCAUg -3'
miRNA:   3'- -UCGAGCGGU--UGGCUUaCCgGCUGUAg -5'
8042 3' -55.2 NC_001973.1 + 18323 0.71 0.71503
Target:  5'- cAGCUCGCucuUggUCGGAUGGCCGcCGg- -3'
miRNA:   3'- -UCGAGCG---GuuGGCUUACCGGCuGUag -5'
8042 3' -55.2 NC_001973.1 + 18411 0.69 0.818076
Target:  5'- cGGCUCGCCAACaCGuugcGGCCGcuaguuuGCAg- -3'
miRNA:   3'- -UCGAGCGGUUG-GCuua-CCGGC-------UGUag -5'
8042 3' -55.2 NC_001973.1 + 21499 0.66 0.925917
Target:  5'- cGGCcCGCCGACuCGAgguugcccagGUcGCCGACGUg -3'
miRNA:   3'- -UCGaGCGGUUG-GCU----------UAcCGGCUGUAg -5'
8042 3' -55.2 NC_001973.1 + 21586 0.71 0.694835
Target:  5'- uGCUCGCCGGCCGAcGUGcacccguuGCUcGCGUCg -3'
miRNA:   3'- uCGAGCGGUUGGCU-UAC--------CGGcUGUAG- -5'
8042 3' -55.2 NC_001973.1 + 22978 0.68 0.86837
Target:  5'- cGGCgCGCCGacgccgacgccgacGCCGAcgugcaaaagaucuUGGCCGACGUg -3'
miRNA:   3'- -UCGaGCGGU--------------UGGCUu-------------ACCGGCUGUAg -5'
8042 3' -55.2 NC_001973.1 + 24376 0.7 0.744758
Target:  5'- cGCgUCG-CGGCCG-AUGGCCGACGa- -3'
miRNA:   3'- uCG-AGCgGUUGGCuUACCGGCUGUag -5'
8042 3' -55.2 NC_001973.1 + 25924 0.7 0.744758
Target:  5'- cAGCUCGCC-GCCGcg-GGCgGGC-UCg -3'
miRNA:   3'- -UCGAGCGGuUGGCuuaCCGgCUGuAG- -5'
8042 3' -55.2 NC_001973.1 + 27164 0.71 0.684654
Target:  5'- -aCUCGCCGACCGuc--GCCGACcgGUCg -3'
miRNA:   3'- ucGAGCGGUUGGCuuacCGGCUG--UAG- -5'
8042 3' -55.2 NC_001973.1 + 28932 0.66 0.936244
Target:  5'- gGGCUUGCacgCGGCUGGGgcggcagcgggGGCCGGCAgUCg -3'
miRNA:   3'- -UCGAGCG---GUUGGCUUa----------CCGGCUGU-AG- -5'
8042 3' -55.2 NC_001973.1 + 32551 0.66 0.925917
Target:  5'- cGGCgaUCGCCGccGCCGAc--GCCGcCGUCg -3'
miRNA:   3'- -UCG--AGCGGU--UGGCUuacCGGCuGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.