miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8042 5' -56.1 NC_001973.1 + 104008 0.66 0.914503
Target:  5'- -----aGCCGGGCCgUC-GACUCGCGg -3'
miRNA:   3'- cauuagUGGUUCGGgAGcCUGGGCGC- -5'
8042 5' -56.1 NC_001973.1 + 77879 0.66 0.914503
Target:  5'- ----cCACCGucgAGCCCgaGGACCUGUGc -3'
miRNA:   3'- cauuaGUGGU---UCGGGagCCUGGGCGC- -5'
8042 5' -56.1 NC_001973.1 + 53520 0.66 0.908565
Target:  5'- -----gGCCGcGCCgUCGGGCCUGUa -3'
miRNA:   3'- cauuagUGGUuCGGgAGCCUGGGCGc -5'
8042 5' -56.1 NC_001973.1 + 30346 0.66 0.902393
Target:  5'- --cGUCGCgCAGGCCgagUUCGGGCCgccggCGCGg -3'
miRNA:   3'- cauUAGUG-GUUCGG---GAGCCUGG-----GCGC- -5'
8042 5' -56.1 NC_001973.1 + 86951 0.66 0.901764
Target:  5'- --cGUCGUCAAGCCgaCGGcgccguccgccccGCCCGCGg -3'
miRNA:   3'- cauUAGUGGUUCGGgaGCC-------------UGGGCGC- -5'
8042 5' -56.1 NC_001973.1 + 159752 0.66 0.89986
Target:  5'- -gGAUCACCucgugcggcacguAGCCCUCGucGCaCCGCa -3'
miRNA:   3'- caUUAGUGGu------------UCGGGAGCc-UG-GGCGc -5'
8042 5' -56.1 NC_001973.1 + 25706 0.66 0.895991
Target:  5'- --cGUCGCCgAAGCCUUgCGcGccGCCCGCGc -3'
miRNA:   3'- cauUAGUGG-UUCGGGA-GC-C--UGGGCGC- -5'
8042 5' -56.1 NC_001973.1 + 31951 0.67 0.889361
Target:  5'- -cGAUCAgcCCGAGCacguagcgcaCCUCGGGCUgCGCGc -3'
miRNA:   3'- caUUAGU--GGUUCG----------GGAGCCUGG-GCGC- -5'
8042 5' -56.1 NC_001973.1 + 153909 0.67 0.889361
Target:  5'- ---uUCGCCGAGCCUgcagacgcCGaGCCCGCu -3'
miRNA:   3'- cauuAGUGGUUCGGGa-------GCcUGGGCGc -5'
8042 5' -56.1 NC_001973.1 + 153948 0.67 0.889361
Target:  5'- ---uUCGCCGAGCCUgcagacgcCGaGCCCGCu -3'
miRNA:   3'- cauuAGUGGUUCGGGa-------GCcUGGGCGc -5'
8042 5' -56.1 NC_001973.1 + 42887 0.67 0.889361
Target:  5'- cGUGAUCugCAGcgcguGUCaCUCGGACCgGaCGa -3'
miRNA:   3'- -CAUUAGugGUU-----CGG-GAGCCUGGgC-GC- -5'
8042 5' -56.1 NC_001973.1 + 59980 0.67 0.882507
Target:  5'- ----cCGCCGGGCCCagacCGcGGCCgGCGa -3'
miRNA:   3'- cauuaGUGGUUCGGGa---GC-CUGGgCGC- -5'
8042 5' -56.1 NC_001973.1 + 146072 0.67 0.882507
Target:  5'- ----gCGCCGAGCCggCUCGGGCggGCGg -3'
miRNA:   3'- cauuaGUGGUUCGG--GAGCCUGggCGC- -5'
8042 5' -56.1 NC_001973.1 + 140371 0.67 0.875432
Target:  5'- cGUcGUCGCCGccgagcggcuGGCUCUCGaGCCgCGCGa -3'
miRNA:   3'- -CAuUAGUGGU----------UCGGGAGCcUGG-GCGC- -5'
8042 5' -56.1 NC_001973.1 + 71762 0.67 0.868143
Target:  5'- ----gCGCCGGGCCCcgccgccgagcUCGaGGCCgGCGg -3'
miRNA:   3'- cauuaGUGGUUCGGG-----------AGC-CUGGgCGC- -5'
8042 5' -56.1 NC_001973.1 + 130422 0.67 0.860643
Target:  5'- --uAUUGCUcuuGCUCUCGGGCCCGUc -3'
miRNA:   3'- cauUAGUGGuu-CGGGAGCCUGGGCGc -5'
8042 5' -56.1 NC_001973.1 + 21294 0.67 0.860643
Target:  5'- --cGUCGCUcAGUCgUCGGGCuuGCGc -3'
miRNA:   3'- cauUAGUGGuUCGGgAGCCUGggCGC- -5'
8042 5' -56.1 NC_001973.1 + 139881 0.67 0.852939
Target:  5'- uUGAUCGgCAAGCUCgagcgcguggugUCGGugCUGCGc -3'
miRNA:   3'- cAUUAGUgGUUCGGG------------AGCCugGGCGC- -5'
8042 5' -56.1 NC_001973.1 + 88759 0.68 0.845037
Target:  5'- aGgcGUCGCgCAGGCaCUCGuGCCCGCu -3'
miRNA:   3'- -CauUAGUG-GUUCGgGAGCcUGGGCGc -5'
8042 5' -56.1 NC_001973.1 + 94836 0.68 0.828666
Target:  5'- -aGAUCGCCGAcacggacggcgcGCaCCUC-GACCCGCu -3'
miRNA:   3'- caUUAGUGGUU------------CG-GGAGcCUGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.