miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8043 3' -60.5 NC_001973.1 + 102126 0.66 0.792596
Target:  5'- uUUGGauaaaguaaacGCCGUCGccucgcGACGGgUCGAGCaGCa -3'
miRNA:   3'- -AGCC-----------CGGCAGC------CUGCCgAGCUUGcCG- -5'
8043 3' -60.5 NC_001973.1 + 38346 0.66 0.792596
Target:  5'- gUCaGuGCCGcCGG-CGGCggCG-ACGGCa -3'
miRNA:   3'- -AGcC-CGGCaGCCuGCCGa-GCuUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 140037 0.66 0.78391
Target:  5'- gCGGGCUGcgccCGGGCG-CUCGAcgagaccaucGCGGa -3'
miRNA:   3'- aGCCCGGCa---GCCUGCcGAGCU----------UGCCg -5'
8043 3' -60.5 NC_001973.1 + 62576 0.66 0.78391
Target:  5'- -aGGGCuCGagCGGGCGcagcgacgcgucGCUCGAGCGacGCg -3'
miRNA:   3'- agCCCG-GCa-GCCUGC------------CGAGCUUGC--CG- -5'
8043 3' -60.5 NC_001973.1 + 90989 0.66 0.778638
Target:  5'- uUCGuGGCgGUCGGcucuaccaaagaaGGCUCGGuuaaagcCGGCg -3'
miRNA:   3'- -AGC-CCGgCAGCCug-----------CCGAGCUu------GCCG- -5'
8043 3' -60.5 NC_001973.1 + 25927 0.66 0.7751
Target:  5'- cUCGccGCCG-CGGGCgGGCUC--GCGGCc -3'
miRNA:   3'- -AGCc-CGGCaGCCUG-CCGAGcuUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 45849 0.66 0.7751
Target:  5'- gUGGGCCuGggcgucgCGGGCGcGCgcuccUCGGccGCGGCg -3'
miRNA:   3'- aGCCCGG-Ca------GCCUGC-CG-----AGCU--UGCCG- -5'
8043 3' -60.5 NC_001973.1 + 111813 0.66 0.774212
Target:  5'- aCGGGugcgacgaccugaCCGagUGGAUGGCcgaGGACGGCu -3'
miRNA:   3'- aGCCC-------------GGCa-GCCUGCCGag-CUUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 44442 0.66 0.766174
Target:  5'- aCGGGCgcUCGGGCgcgGGCgcucggggaUCGAACGGg -3'
miRNA:   3'- aGCCCGgcAGCCUG---CCG---------AGCUUGCCg -5'
8043 3' -60.5 NC_001973.1 + 18257 0.66 0.766174
Target:  5'- gUCGGucCCGUCGGcgcacACGGC-CGAcgAgGGCa -3'
miRNA:   3'- -AGCCc-GGCAGCC-----UGCCGaGCU--UgCCG- -5'
8043 3' -60.5 NC_001973.1 + 144453 0.66 0.757141
Target:  5'- gCGcGCgUGUCGGGCGGCgugCGGgacaaGCGGUu -3'
miRNA:   3'- aGCcCG-GCAGCCUGCCGa--GCU-----UGCCG- -5'
8043 3' -60.5 NC_001973.1 + 12499 0.66 0.757141
Target:  5'- cUCcGGCggagguuuacgCGUCGGcCGGCUCaaauuGAACGGUa -3'
miRNA:   3'- -AGcCCG-----------GCAGCCuGCCGAG-----CUUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 16901 0.66 0.757141
Target:  5'- uUCGcGCCGgCGGcgGCGGCcucUCG-GCGGCg -3'
miRNA:   3'- -AGCcCGGCaGCC--UGCCG---AGCuUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 54026 0.66 0.757141
Target:  5'- aUCGGGUuguCGUCGGGCaGGUugUUGGGCacggGGCc -3'
miRNA:   3'- -AGCCCG---GCAGCCUG-CCG--AGCUUG----CCG- -5'
8043 3' -60.5 NC_001973.1 + 56369 0.66 0.757141
Target:  5'- cUCGGcGCCGcgcUCGGcgccaGGCUCGGuauCGGg -3'
miRNA:   3'- -AGCC-CGGC---AGCCug---CCGAGCUu--GCCg -5'
8043 3' -60.5 NC_001973.1 + 84157 0.66 0.757141
Target:  5'- cUCGaGGCCGa--GGCGGa--GAGCGGCg -3'
miRNA:   3'- -AGC-CCGGCagcCUGCCgagCUUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 45440 0.66 0.754411
Target:  5'- aUUGGGCgGUCGGguugucgcacagguGCGcGCaaUCGAAcguCGGCg -3'
miRNA:   3'- -AGCCCGgCAGCC--------------UGC-CG--AGCUU---GCCG- -5'
8043 3' -60.5 NC_001973.1 + 117487 0.66 0.748008
Target:  5'- -aGGGCCGUaucauGAUGGCUuuggcCGccGGCGGCg -3'
miRNA:   3'- agCCCGGCAgc---CUGCCGA-----GC--UUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 95021 0.66 0.748008
Target:  5'- uUCGuGCCGaUGuGCGGCggGGACGGCa -3'
miRNA:   3'- -AGCcCGGCaGCcUGCCGagCUUGCCG- -5'
8043 3' -60.5 NC_001973.1 + 88485 0.66 0.748008
Target:  5'- aCGGuGCCGcCGGcGCGGC----GCGGCu -3'
miRNA:   3'- aGCC-CGGCaGCC-UGCCGagcuUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.