miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8045 5' -57.3 NC_001973.1 + 30396 0.66 0.868143
Target:  5'- ---cGGCGCggcgGCGgCGGCGGAGgcgcCGCGa -3'
miRNA:   3'- cagaCUGCGa---CGCgGUCGUCUU----GCGC- -5'
8045 5' -57.3 NC_001973.1 + 111658 0.66 0.868143
Target:  5'- aUCUGcgcAgGCUGCGCgggCAGCGGAucgaGCGg -3'
miRNA:   3'- cAGAC---UgCGACGCG---GUCGUCUug--CGC- -5'
8045 5' -57.3 NC_001973.1 + 65183 0.66 0.868143
Target:  5'- aGUC-GGCGCucaacuacaUGCucgacauggGCCGGCAcGAGCGCGa -3'
miRNA:   3'- -CAGaCUGCG---------ACG---------CGGUCGU-CUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 146580 0.66 0.860643
Target:  5'- -gCUGGCagguGCgaUGCGUCAGCAGGcacACGCu -3'
miRNA:   3'- caGACUG----CG--ACGCGGUCGUCU---UGCGc -5'
8045 5' -57.3 NC_001973.1 + 19831 0.66 0.852939
Target:  5'- -cCUGGCGCUGgGUgAGC-GAGCGg- -3'
miRNA:   3'- caGACUGCGACgCGgUCGuCUUGCgc -5'
8045 5' -57.3 NC_001973.1 + 46231 0.66 0.852939
Target:  5'- gGUCaUGugcGCGCUGUGCC-GCAGcgaguacuACGCGa -3'
miRNA:   3'- -CAG-AC---UGCGACGCGGuCGUCu-------UGCGC- -5'
8045 5' -57.3 NC_001973.1 + 157899 0.66 0.852939
Target:  5'- gGUCgcgGcCGCcGCGCCcGC-GAGCGCGc -3'
miRNA:   3'- -CAGa--CuGCGaCGCGGuCGuCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 127868 0.66 0.852158
Target:  5'- -cCUGACGUUGaGUCAGCGaccggucGAugGCGu -3'
miRNA:   3'- caGACUGCGACgCGGUCGU-------CUugCGC- -5'
8045 5' -57.3 NC_001973.1 + 28646 0.66 0.852158
Target:  5'- aGUCcuGCaGCUGCGCgAGCGcggcgucGAGCGCGc -3'
miRNA:   3'- -CAGacUG-CGACGCGgUCGU-------CUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 47736 0.66 0.847428
Target:  5'- -gCUGACGCUGaCGCggccgccCGGCGGAaucacggccuccucgGCGCu -3'
miRNA:   3'- caGACUGCGAC-GCG-------GUCGUCU---------------UGCGc -5'
8045 5' -57.3 NC_001973.1 + 115483 0.66 0.845037
Target:  5'- -gCUGACGCaGCGCgAcGU-GAGCGCGc -3'
miRNA:   3'- caGACUGCGaCGCGgU-CGuCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 47576 0.66 0.845037
Target:  5'- aGUUgGACGCgccaaaguUGCG-CAGCAGcACGCGg -3'
miRNA:   3'- -CAGaCUGCG--------ACGCgGUCGUCuUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 77563 0.66 0.836944
Target:  5'- -cCUGACGaugGCccaCCAGCAGAGCGg- -3'
miRNA:   3'- caGACUGCga-CGc--GGUCGUCUUGCgc -5'
8045 5' -57.3 NC_001973.1 + 64254 0.66 0.836944
Target:  5'- ---aGuCGCUGCGCCAGUucGGcgaGGCGCa -3'
miRNA:   3'- cagaCuGCGACGCGGUCG--UC---UUGCGc -5'
8045 5' -57.3 NC_001973.1 + 39904 0.66 0.834479
Target:  5'- uGUCgaaGACGgaGUGCCguucacaaacagcaGGCGGAcGCGCGa -3'
miRNA:   3'- -CAGa--CUGCgaCGCGG--------------UCGUCU-UGCGC- -5'
8045 5' -57.3 NC_001973.1 + 140748 0.67 0.831998
Target:  5'- -gCUGGCGCUguaccgcgaguucucGCGCguGUAcagcGAGCGCGa -3'
miRNA:   3'- caGACUGCGA---------------CGCGguCGU----CUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 159107 0.67 0.831998
Target:  5'- -aCUGGCGUUGCucggcccgcgacugaGCgAGuCGGAGCGCa -3'
miRNA:   3'- caGACUGCGACG---------------CGgUC-GUCUUGCGc -5'
8045 5' -57.3 NC_001973.1 + 46300 0.67 0.831998
Target:  5'- gGUCgUGGCGCUcgGCGCgaucgucgccuuucuCGcGCAGGGCGCGc -3'
miRNA:   3'- -CAG-ACUGCGA--CGCG---------------GU-CGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 120808 0.67 0.828666
Target:  5'- -gCUGACGCacuacgaucGCGCCGuGCccgcGGACGCGg -3'
miRNA:   3'- caGACUGCGa--------CGCGGU-CGu---CUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 59347 0.67 0.828666
Target:  5'- ---cGACGCgGUGCUGGCGGcccACGCGc -3'
miRNA:   3'- cagaCUGCGaCGCGGUCGUCu--UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.