miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8045 5' -57.3 NC_001973.1 + 11021 0.8 0.188381
Target:  5'- -cCUGGCGCUGCGUCAGCGagcggucGAugGCGu -3'
miRNA:   3'- caGACUGCGACGCGGUCGU-------CUugCGC- -5'
8045 5' -57.3 NC_001973.1 + 23083 0.79 0.20342
Target:  5'- --aUGGCGCUGCGCuCGGCcgaAGAGCGCGc -3'
miRNA:   3'- cagACUGCGACGCG-GUCG---UCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 152327 0.79 0.20342
Target:  5'- aUCgugGACGCggUGCGCgGGCGGGGCGCGa -3'
miRNA:   3'- cAGa--CUGCG--ACGCGgUCGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 132441 0.78 0.241232
Target:  5'- ---cGugGUggagGCGCCGGCGGGGCGCGg -3'
miRNA:   3'- cagaCugCGa---CGCGGUCGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 138623 0.77 0.284727
Target:  5'- cGUCUGcACgGCUGCGCCAGCGcGGGCgGCa -3'
miRNA:   3'- -CAGAC-UG-CGACGCGGUCGU-CUUG-CGc -5'
8045 5' -57.3 NC_001973.1 + 17104 0.76 0.341745
Target:  5'- gGUCUGAUG--GCGucCCAGCGGAGCGCGg -3'
miRNA:   3'- -CAGACUGCgaCGC--GGUCGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 3538 0.75 0.356444
Target:  5'- -cCUGuCGCUGUagcccaugagguaGCCGGCGGGGCGCGc -3'
miRNA:   3'- caGACuGCGACG-------------CGGUCGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 121298 0.75 0.389649
Target:  5'- cGUCgcccgcGGCGC-GCGCCGGCGG-ACGCGc -3'
miRNA:   3'- -CAGa-----CUGCGaCGCGGUCGUCuUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 136577 0.73 0.459964
Target:  5'- --aUGGCGCUgcGCGCCGGCGcGACGCu -3'
miRNA:   3'- cagACUGCGA--CGCGGUCGUcUUGCGc -5'
8045 5' -57.3 NC_001973.1 + 88480 0.72 0.536459
Target:  5'- cGUC-GACGgUGcCGCCGGCGcGGCGCGg -3'
miRNA:   3'- -CAGaCUGCgAC-GCGGUCGUcUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 26621 0.72 0.546356
Target:  5'- cGUUUGGCgGCUuccaaguccGCGCCGGCGGGccaGCGCa -3'
miRNA:   3'- -CAGACUG-CGA---------CGCGGUCGUCU---UGCGc -5'
8045 5' -57.3 NC_001973.1 + 122660 0.71 0.556311
Target:  5'- -cCUGaACGCgGCGCCgucgGGcCAGAACGCGc -3'
miRNA:   3'- caGAC-UGCGaCGCGG----UC-GUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 134174 0.71 0.566317
Target:  5'- aUCU--UGCUGCGCCAGCGGggUauaaagGCGa -3'
miRNA:   3'- cAGAcuGCGACGCGGUCGUCuuG------CGC- -5'
8045 5' -57.3 NC_001973.1 + 107318 0.71 0.566317
Target:  5'- ---cGAUGCUggcGCGCCuggaaGGCGGAGCGCGc -3'
miRNA:   3'- cagaCUGCGA---CGCGG-----UCGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 118112 0.71 0.576369
Target:  5'- ---gGGCGCgGCGCUcaAGCAGGugGCGc -3'
miRNA:   3'- cagaCUGCGaCGCGG--UCGUCUugCGC- -5'
8045 5' -57.3 NC_001973.1 + 115384 0.71 0.576369
Target:  5'- ---gGACGCgaccCGCCGGCuGAGCGCGc -3'
miRNA:   3'- cagaCUGCGac--GCGGUCGuCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 95716 0.71 0.586461
Target:  5'- ---cGGCGCggUGCGCCGgcuguuggcGCAGGGCGCGc -3'
miRNA:   3'- cagaCUGCG--ACGCGGU---------CGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 67737 0.71 0.596584
Target:  5'- -gCUGAUGCgguUGuCGCCGuGCAGGAUGCGc -3'
miRNA:   3'- caGACUGCG---AC-GCGGU-CGUCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 136432 0.71 0.596584
Target:  5'- ----cGCGCUGCGCgAGCgcaGGGGCGCGu -3'
miRNA:   3'- cagacUGCGACGCGgUCG---UCUUGCGC- -5'
8045 5' -57.3 NC_001973.1 + 86526 0.71 0.606735
Target:  5'- -cCUGGCGCcgccggcGCGCCugaagAGCAuGAACGCGg -3'
miRNA:   3'- caGACUGCGa------CGCGG-----UCGU-CUUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.