miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8046 5' -56.6 NC_001973.1 + 28989 0.66 0.910541
Target:  5'- uAGUCGGggaAGggcgCCGgcGGCuGGGCa -3'
miRNA:   3'- -UCAGCCacgUCaua-GGCuaCCG-CCCG- -5'
8046 5' -56.6 NC_001973.1 + 13320 0.66 0.884938
Target:  5'- --gCGGUGCAGUAcCCGgcGGaCGaGCg -3'
miRNA:   3'- ucaGCCACGUCAUaGGCuaCC-GCcCG- -5'
8046 5' -56.6 NC_001973.1 + 96665 0.67 0.85507
Target:  5'- gGGaCGG-GCGGU-UCUGGUGGCccgaaacGGGCg -3'
miRNA:   3'- -UCaGCCaCGUCAuAGGCUACCG-------CCCG- -5'
8046 5' -56.6 NC_001973.1 + 90282 0.68 0.822737
Target:  5'- cGUCGGcucgGcCGGUGUucaaggcgcacagUCGGUcGGCGGGCg -3'
miRNA:   3'- uCAGCCa---C-GUCAUA-------------GGCUA-CCGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 76923 0.68 0.821892
Target:  5'- cGUCGGUGaacauauucCAGUAcguggCCGAccuggccaccaaGGCGGGCa -3'
miRNA:   3'- uCAGCCAC---------GUCAUa----GGCUa-----------CCGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 29199 0.69 0.751416
Target:  5'- uGUCGcGUGUGGaugCCGuucgcgauguUGGCGGGCa -3'
miRNA:   3'- uCAGC-CACGUCauaGGCu---------ACCGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 55427 0.69 0.732172
Target:  5'- cGUCGGcggcgGCGGgc-CCGAcGGCGcGGCg -3'
miRNA:   3'- uCAGCCa----CGUCauaGGCUaCCGC-CCG- -5'
8046 5' -56.6 NC_001973.1 + 82293 0.7 0.722418
Target:  5'- uAGcUGGUGCAGU-UgCGAUGGCaGGUg -3'
miRNA:   3'- -UCaGCCACGUCAuAgGCUACCGcCCG- -5'
8046 5' -56.6 NC_001973.1 + 22783 0.7 0.716528
Target:  5'- uGGUCGGgcgGCAGUucagcgcgaacgauuG-CCGGUGcgccGCGGGCu -3'
miRNA:   3'- -UCAGCCa--CGUCA---------------UaGGCUAC----CGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 76615 0.7 0.712588
Target:  5'- uGG-CGGUGCAGUA-CCaaGUGGCGcaGGCg -3'
miRNA:   3'- -UCaGCCACGUCAUaGGc-UACCGC--CCG- -5'
8046 5' -56.6 NC_001973.1 + 61168 0.71 0.6616
Target:  5'- cGUCGG-GCGGUcgCCGAcgcuccucgcUgaacgcgcgcucgGGCGGGCg -3'
miRNA:   3'- uCAGCCaCGUCAuaGGCU----------A-------------CCGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 146059 0.72 0.61202
Target:  5'- aGGUUGGgccGCGGcg-CCGAgccggcucgGGCGGGCg -3'
miRNA:   3'- -UCAGCCa--CGUCauaGGCUa--------CCGCCCG- -5'
8046 5' -56.6 NC_001973.1 + 74783 0.8 0.22867
Target:  5'- -cUUGGUGCGGUcgCCGG-GGUGGGCg -3'
miRNA:   3'- ucAGCCACGUCAuaGGCUaCCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.