miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8047 3' -60.2 NC_001973.1 + 48554 0.8 0.145113
Target:  5'- cCGCUCUGaauuGCGGCC-GCGCCGACgACGa -3'
miRNA:   3'- -GCGAGAU----CGCCGGaCGCGGCUG-UGCc -5'
8047 3' -60.2 NC_001973.1 + 27858 0.79 0.172279
Target:  5'- gGCgCUGGCGGCCgcgGcCGCgGGCGCGGg -3'
miRNA:   3'- gCGaGAUCGCCGGa--C-GCGgCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 124499 0.75 0.269738
Target:  5'- gCGCUCUGcCGGCgCUG-GCCGACGCGu -3'
miRNA:   3'- -GCGAGAUcGCCG-GACgCGGCUGUGCc -5'
8047 3' -60.2 NC_001973.1 + 110764 0.75 0.301868
Target:  5'- gCGCaUCUcgagacGGCGGCCUGCuccGgCGGCACGGc -3'
miRNA:   3'- -GCG-AGA------UCGCCGGACG---CgGCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 36302 0.74 0.321817
Target:  5'- gCGC-CUAcaacacgggcgccGCGGCCgacGCgGCCGACGCGGg -3'
miRNA:   3'- -GCGaGAU-------------CGCCGGa--CG-CGGCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 93890 0.73 0.359248
Target:  5'- uGUUCUA-CGGCCUGCGCU-ACACGa -3'
miRNA:   3'- gCGAGAUcGCCGGACGCGGcUGUGCc -5'
8047 3' -60.2 NC_001973.1 + 13436 0.73 0.374735
Target:  5'- gCGCaacaUCgacGCGGCCaGCGUCGugGCGGa -3'
miRNA:   3'- -GCG----AGau-CGCCGGaCGCGGCugUGCC- -5'
8047 3' -60.2 NC_001973.1 + 31354 0.73 0.38185
Target:  5'- gCGCUCUgcguggucgccgcGGCGGUgUGCGCCaGCgACGGc -3'
miRNA:   3'- -GCGAGA-------------UCGCCGgACGCGGcUG-UGCC- -5'
8047 3' -60.2 NC_001973.1 + 45799 0.72 0.396348
Target:  5'- uGCUCgaGGCGGCguugggagucaaucUagugUGCGCCGGCGCGGc -3'
miRNA:   3'- gCGAGa-UCGCCG--------------G----ACGCGGCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 53849 0.72 0.398798
Target:  5'- aGCUCgccccGGCGGCggcgGCGCCGccgaGCGCGGc -3'
miRNA:   3'- gCGAGa----UCGCCGga--CGCGGC----UGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 122602 0.72 0.407036
Target:  5'- uGCUgcGGCGGaggcgUCggcgGCGCCGACGCGGg -3'
miRNA:   3'- gCGAgaUCGCC-----GGa---CGCGGCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 109359 0.72 0.432378
Target:  5'- cCGCUCggccgUAGCGGUCgacgaGCGCCucguaGGCGCGGc -3'
miRNA:   3'- -GCGAG-----AUCGCCGGa----CGCGG-----CUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 28286 0.72 0.432378
Target:  5'- gCGcCUCgUGGCGGCCgaGCGCCG-CGuCGGc -3'
miRNA:   3'- -GC-GAG-AUCGCCGGa-CGCGGCuGU-GCC- -5'
8047 3' -60.2 NC_001973.1 + 7119 0.72 0.441028
Target:  5'- uGCUCgaguGCGGCCUGUuuuucuCgCGACGCGGc -3'
miRNA:   3'- gCGAGau--CGCCGGACGc-----G-GCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 61010 0.71 0.449775
Target:  5'- gCGCUCUuccGGCGGag-GCGCgCGACGCaGGa -3'
miRNA:   3'- -GCGAGA---UCGCCggaCGCG-GCUGUG-CC- -5'
8047 3' -60.2 NC_001973.1 + 133294 0.71 0.458617
Target:  5'- aCGCggCcGGCGGCg-GCGCCGucGCGCGGc -3'
miRNA:   3'- -GCGa-GaUCGCCGgaCGCGGC--UGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 40489 0.71 0.46755
Target:  5'- gCGCgUC-AGCGGCCUGaucaCCGugACGGc -3'
miRNA:   3'- -GCG-AGaUCGCCGGACgc--GGCugUGCC- -5'
8047 3' -60.2 NC_001973.1 + 57203 0.71 0.468449
Target:  5'- gCGUUCagGGgGGCCgucgacgacgucgagGuCGCCGACGCGGa -3'
miRNA:   3'- -GCGAGa-UCgCCGGa--------------C-GCGGCUGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 132207 0.71 0.494871
Target:  5'- uCGgUCUccucGGCGGCCUgGCGgCGcCGCGGu -3'
miRNA:   3'- -GCgAGA----UCGCCGGA-CGCgGCuGUGCC- -5'
8047 3' -60.2 NC_001973.1 + 51470 0.71 0.494871
Target:  5'- aGCUCgAGCGGCC-GgGUCGAUGCGc -3'
miRNA:   3'- gCGAGaUCGCCGGaCgCGGCUGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.