miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8047 5' -53 NC_001973.1 + 86731 0.66 0.981975
Target:  5'- cUgCGCGGCGACGAAcgGCggcgcGCGGc -3'
miRNA:   3'- cAgGUGUCGCUGCUUa-CGacau-CGCC- -5'
8047 5' -53 NC_001973.1 + 22002 0.66 0.98177
Target:  5'- gGUCUugaaacaGCAGCGGCGcuUGCUGU-GCu- -3'
miRNA:   3'- -CAGG-------UGUCGCUGCuuACGACAuCGcc -5'
8047 5' -53 NC_001973.1 + 141251 0.66 0.979842
Target:  5'- aGUUCGCGGaCGAgucCGA--GCUGgagAGCGGg -3'
miRNA:   3'- -CAGGUGUC-GCU---GCUuaCGACa--UCGCC- -5'
8047 5' -53 NC_001973.1 + 64867 0.66 0.977527
Target:  5'- cGUCC-CuGCGGgcucgcgccCGaAGUGCUGgcGCGGg -3'
miRNA:   3'- -CAGGuGuCGCU---------GC-UUACGACauCGCC- -5'
8047 5' -53 NC_001973.1 + 22345 0.67 0.96629
Target:  5'- gGUCCguggugcugAUAGCGGCGc-UGUUGaUAGCGGu -3'
miRNA:   3'- -CAGG---------UGUCGCUGCuuACGAC-AUCGCC- -5'
8047 5' -53 NC_001973.1 + 38841 0.67 0.96629
Target:  5'- -gCgGCGGCGGCGAggGCgcgGGCGa -3'
miRNA:   3'- caGgUGUCGCUGCUuaCGacaUCGCc -5'
8047 5' -53 NC_001973.1 + 81605 0.67 0.96629
Target:  5'- cGUUCAcCGGCGACag--GUcGUAGCGGg -3'
miRNA:   3'- -CAGGU-GUCGCUGcuuaCGaCAUCGCC- -5'
8047 5' -53 NC_001973.1 + 122524 0.67 0.962953
Target:  5'- cGUCUuugucgggggACgAGCGGCGGcgGCgcugGUGGUGGu -3'
miRNA:   3'- -CAGG----------UG-UCGCUGCUuaCGa---CAUCGCC- -5'
8047 5' -53 NC_001973.1 + 60680 0.67 0.962953
Target:  5'- cUCgGCAGCGGCGAGaGaaGUuugaAGCGGu -3'
miRNA:   3'- cAGgUGUCGCUGCUUaCgaCA----UCGCC- -5'
8047 5' -53 NC_001973.1 + 28969 0.67 0.955602
Target:  5'- aGUCgGgCGGCGACGc--GUUGUAGuCGGg -3'
miRNA:   3'- -CAGgU-GUCGCUGCuuaCGACAUC-GCC- -5'
8047 5' -53 NC_001973.1 + 42959 0.67 0.95158
Target:  5'- cGUCC-CAGCGccgucgacGCGAgAUGCUGccguuGCGGa -3'
miRNA:   3'- -CAGGuGUCGC--------UGCU-UACGACau---CGCC- -5'
8047 5' -53 NC_001973.1 + 117550 0.67 0.95158
Target:  5'- cGUCCgacGCGGaCGACGAcUGCg--AGUGGg -3'
miRNA:   3'- -CAGG---UGUC-GCUGCUuACGacaUCGCC- -5'
8047 5' -53 NC_001973.1 + 75938 0.67 0.95158
Target:  5'- -aUCGCGuGCGACGAGUGCUGcaaaaaggAGCu- -3'
miRNA:   3'- caGGUGU-CGCUGCUUACGACa-------UCGcc -5'
8047 5' -53 NC_001973.1 + 44594 0.68 0.942819
Target:  5'- -cCCGCGGCGGCG---GCg--AGCGGg -3'
miRNA:   3'- caGGUGUCGCUGCuuaCGacaUCGCC- -5'
8047 5' -53 NC_001973.1 + 7761 0.68 0.938076
Target:  5'- -aCCGCGGCGGCGGcgGCgucgaggAGCuGGc -3'
miRNA:   3'- caGGUGUCGCUGCUuaCGaca----UCG-CC- -5'
8047 5' -53 NC_001973.1 + 121543 0.68 0.933088
Target:  5'- -aCCACcgAGCGGCGucgGCgcgUGUGGUGGa -3'
miRNA:   3'- caGGUG--UCGCUGCuuaCG---ACAUCGCC- -5'
8047 5' -53 NC_001973.1 + 55427 0.68 0.933088
Target:  5'- cGUCgGCGGCGGCGGGcccgacgGCgc-GGCGGa -3'
miRNA:   3'- -CAGgUGUCGCUGCUUa------CGacaUCGCC- -5'
8047 5' -53 NC_001973.1 + 126596 0.68 0.927854
Target:  5'- cGUCCugGGCGAUGucggccAUGCgGUuggccagcugAGCGGu -3'
miRNA:   3'- -CAGGugUCGCUGCu-----UACGaCA----------UCGCC- -5'
8047 5' -53 NC_001973.1 + 92785 0.69 0.920682
Target:  5'- uGUCCGCGGaCGAgGAcgaguccaaguucgGUGCUGgGGCGu -3'
miRNA:   3'- -CAGGUGUC-GCUgCU--------------UACGACaUCGCc -5'
8047 5' -53 NC_001973.1 + 143087 0.69 0.916647
Target:  5'- uGUCCGCAGaCGuCGcAGUGCUucugcGgcGCGGa -3'
miRNA:   3'- -CAGGUGUC-GCuGC-UUACGA-----CauCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.