miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8047 5' -53 NC_001973.1 + 78614 0.69 0.90446
Target:  5'- aGUCCGCGGaCGACGAG-GCc---GCGGg -3'
miRNA:   3'- -CAGGUGUC-GCUGCUUaCGacauCGCC- -5'
8047 5' -53 NC_001973.1 + 79245 0.69 0.898004
Target:  5'- -gCCAC-GUGAUGGAguUGCUGcAGCGGu -3'
miRNA:   3'- caGGUGuCGCUGCUU--ACGACaUCGCC- -5'
8047 5' -53 NC_001973.1 + 86438 0.69 0.898004
Target:  5'- -aCguCAGCGACGAcgGCcGcGGCGGc -3'
miRNA:   3'- caGguGUCGCUGCUuaCGaCaUCGCC- -5'
8047 5' -53 NC_001973.1 + 146066 0.7 0.87722
Target:  5'- -gCCGCGGCGcCGAGccgGCUcgGGCGGg -3'
miRNA:   3'- caGGUGUCGCuGCUUa--CGAcaUCGCC- -5'
8047 5' -53 NC_001973.1 + 134059 0.7 0.87722
Target:  5'- -cCCGCGGCGACuGAAcGCgaccuugGUGGCGa -3'
miRNA:   3'- caGGUGUCGCUG-CUUaCGa------CAUCGCc -5'
8047 5' -53 NC_001973.1 + 54237 0.7 0.86223
Target:  5'- uGUCCAUGGCGAgcUGGAUGUagcgcaacgcGUGGCGGu -3'
miRNA:   3'- -CAGGUGUCGCU--GCUUACGa---------CAUCGCC- -5'
8047 5' -53 NC_001973.1 + 24103 0.7 0.854411
Target:  5'- gGUCgACGGCGACGuGUcGCUG-AGcCGGg -3'
miRNA:   3'- -CAGgUGUCGCUGCuUA-CGACaUC-GCC- -5'
8047 5' -53 NC_001973.1 + 41134 0.72 0.766092
Target:  5'- aGUUguCGGCGGCGGcgGCgGUcAGCGGg -3'
miRNA:   3'- -CAGguGUCGCUGCUuaCGaCA-UCGCC- -5'
8047 5' -53 NC_001973.1 + 81185 0.73 0.746663
Target:  5'- gGUCgGCGGCGGCGAcgGUGUUGgucAGCGc -3'
miRNA:   3'- -CAGgUGUCGCUGCU--UACGACa--UCGCc -5'
8047 5' -53 NC_001973.1 + 110668 0.73 0.716768
Target:  5'- uUCCACGGCGA--GAUGaCcGUGGCGGg -3'
miRNA:   3'- cAGGUGUCGCUgcUUAC-GaCAUCGCC- -5'
8047 5' -53 NC_001973.1 + 35670 0.74 0.665578
Target:  5'- -aCCACGGCgcggccGACGGcgGCgcgGUGGCGGc -3'
miRNA:   3'- caGGUGUCG------CUGCUuaCGa--CAUCGCC- -5'
8047 5' -53 NC_001973.1 + 96560 0.75 0.624064
Target:  5'- uGUUCAUuugGGCGACGAucUGCgcgGUGGCGGc -3'
miRNA:   3'- -CAGGUG---UCGCUGCUu-ACGa--CAUCGCC- -5'
8047 5' -53 NC_001973.1 + 19002 0.77 0.520749
Target:  5'- cGUUCACgAGCGACGAcuuugucucguacAUGCUG-AGCGGc -3'
miRNA:   3'- -CAGGUG-UCGCUGCU-------------UACGACaUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.