miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8048 3' -54.4 NC_001973.1 + 124134 0.66 0.961878
Target:  5'- cGAACGGcUGGAGcACCUGcgcgGCGAG-GCu -3'
miRNA:   3'- -CUUGCU-ACCUCcUGGAC----UGCUCuCGc -5'
8048 3' -54.4 NC_001973.1 + 55817 0.66 0.954482
Target:  5'- cGAACGGcgacagaGGccugcGGACC-GGCGAGGGCGa -3'
miRNA:   3'- -CUUGCUa------CCu----CCUGGaCUGCUCUCGC- -5'
8048 3' -54.4 NC_001973.1 + 5700 0.67 0.936922
Target:  5'- -cGCGA-GGAGuGCCUGAgGAGcGCGu -3'
miRNA:   3'- cuUGCUaCCUCcUGGACUgCUCuCGC- -5'
8048 3' -54.4 NC_001973.1 + 145392 0.67 0.931938
Target:  5'- aGAACGA-GGAGcGCCUGACGcuGGUc -3'
miRNA:   3'- -CUUGCUaCCUCcUGGACUGCucUCGc -5'
8048 3' -54.4 NC_001973.1 + 113394 0.68 0.915547
Target:  5'- cGAUGAUGacgcaccuGGGCUUGACGGGcAGCGg -3'
miRNA:   3'- cUUGCUACcu------CCUGGACUGCUC-UCGC- -5'
8048 3' -54.4 NC_001973.1 + 135895 0.68 0.903424
Target:  5'- aGAGCGgcGGucgcGGGCCgGACGAucgucgcaGAGCGg -3'
miRNA:   3'- -CUUGCuaCCu---CCUGGaCUGCU--------CUCGC- -5'
8048 3' -54.4 NC_001973.1 + 42588 0.68 0.897008
Target:  5'- uGACGGUgcucgccaaGGAGGugCggcGCGAGGGCGc -3'
miRNA:   3'- cUUGCUA---------CCUCCugGac-UGCUCUCGC- -5'
8048 3' -54.4 NC_001973.1 + 107381 0.71 0.766507
Target:  5'- aGGACGA-GGAGGAC--GACGAGccGGCGa -3'
miRNA:   3'- -CUUGCUaCCUCCUGgaCUGCUC--UCGC- -5'
8048 3' -54.4 NC_001973.1 + 132437 0.71 0.756972
Target:  5'- cGAGCGugGUGGAGGcGCC-GGCGGGGcGCGg -3'
miRNA:   3'- -CUUGC--UACCUCC-UGGaCUGCUCU-CGC- -5'
8048 3' -54.4 NC_001973.1 + 93923 0.72 0.70782
Target:  5'- aGAcCGAagUGGAGGugCUgGACGAGcGCGa -3'
miRNA:   3'- -CUuGCU--ACCUCCugGA-CUGCUCuCGC- -5'
8048 3' -54.4 NC_001973.1 + 23214 0.72 0.687642
Target:  5'- cGAGCGcgcaGUGGcgcAGGGCCUGGCGcugcuGAGCGc -3'
miRNA:   3'- -CUUGC----UACC---UCCUGGACUGCu----CUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.