miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8048 5' -64.9 NC_001973.1 + 6695 0.66 0.593323
Target:  5'- -aCGGacgaCUCGauaaugaauugaaucCCGCGCCgUCGUUGGCCg -3'
miRNA:   3'- agGCCg---GAGC---------------GGCGCGG-GGCAGCUGG- -5'
8048 5' -64.9 NC_001973.1 + 18239 0.66 0.589556
Target:  5'- -gUGGCacgCGCUGCucgagucgGUCCCGUCGGCg -3'
miRNA:   3'- agGCCGga-GCGGCG--------CGGGGCAGCUGg -5'
8048 5' -64.9 NC_001973.1 + 18384 0.66 0.589556
Target:  5'- gCCGGCguUUCGCCG-GCCCUcaucauUCGGCUc -3'
miRNA:   3'- aGGCCG--GAGCGGCgCGGGGc-----AGCUGG- -5'
8048 5' -64.9 NC_001973.1 + 21495 0.66 0.589556
Target:  5'- gUCgCGGCC-CGCCGacucgagguUGCCCagGUCG-CCg -3'
miRNA:   3'- -AG-GCCGGaGCGGC---------GCGGGg-CAGCuGG- -5'
8048 5' -64.9 NC_001973.1 + 83448 0.66 0.589556
Target:  5'- cCCGGUgCgacagCGCCGCGCU-CGUCGAg- -3'
miRNA:   3'- aGGCCG-Ga----GCGGCGCGGgGCAGCUgg -5'
8048 5' -64.9 NC_001973.1 + 157900 0.66 0.589556
Target:  5'- gUCgCGGCC--GCCGCGCCCg--CGAgCg -3'
miRNA:   3'- -AG-GCCGGagCGGCGCGGGgcaGCUgG- -5'
8048 5' -64.9 NC_001973.1 + 52850 0.66 0.589556
Target:  5'- -aCGGCCgCG-CGCGgCCgGUCGGuCCa -3'
miRNA:   3'- agGCCGGaGCgGCGCgGGgCAGCU-GG- -5'
8048 5' -64.9 NC_001973.1 + 72721 0.66 0.580158
Target:  5'- uUCgGGCCcCGCCGCcaCgCgGUCGACg -3'
miRNA:   3'- -AGgCCGGaGCGGCGc-GgGgCAGCUGg -5'
8048 5' -64.9 NC_001973.1 + 27887 0.66 0.580158
Target:  5'- -gCGcGCuCUCGCCGCGaCuCCCGUUGcGCa -3'
miRNA:   3'- agGC-CG-GAGCGGCGC-G-GGGCAGC-UGg -5'
8048 5' -64.9 NC_001973.1 + 81887 0.66 0.580158
Target:  5'- -gCGcGUgUCgGCCGCGUCCCGaCGcACCa -3'
miRNA:   3'- agGC-CGgAG-CGGCGCGGGGCaGC-UGG- -5'
8048 5' -64.9 NC_001973.1 + 132998 0.66 0.580158
Target:  5'- cUUGGUCaUCGCCuugGCCaCCGUCGACa -3'
miRNA:   3'- aGGCCGG-AGCGGcg-CGG-GGCAGCUGg -5'
8048 5' -64.9 NC_001973.1 + 6962 0.66 0.580158
Target:  5'- cUCCGGCugCUCGCCcgaacaGgGCCgCCG-CGGCa -3'
miRNA:   3'- -AGGCCG--GAGCGG------CgCGG-GGCaGCUGg -5'
8048 5' -64.9 NC_001973.1 + 158476 0.66 0.580158
Target:  5'- aUCGG-CUCGuCCGCGCCCgagcCGauUCGACa -3'
miRNA:   3'- aGGCCgGAGC-GGCGCGGG----GC--AGCUGg -5'
8048 5' -64.9 NC_001973.1 + 158691 0.66 0.580158
Target:  5'- -gCGGCCgagCGCgCGCcuaccgacGCCCUGUUcGCCg -3'
miRNA:   3'- agGCCGGa--GCG-GCG--------CGGGGCAGcUGG- -5'
8048 5' -64.9 NC_001973.1 + 27792 0.66 0.57922
Target:  5'- uUCgCGGCggCUCGUCGCGCCCuugaaacacaCGUUcuugcagGACCu -3'
miRNA:   3'- -AG-GCCG--GAGCGGCGCGGG----------GCAG-------CUGG- -5'
8048 5' -64.9 NC_001973.1 + 20203 0.66 0.570792
Target:  5'- aCUGuCCUUG-CGCGCCUCGUUGAUUa -3'
miRNA:   3'- aGGCcGGAGCgGCGCGGGGCAGCUGG- -5'
8048 5' -64.9 NC_001973.1 + 26638 0.66 0.570792
Target:  5'- gUCCGcGCCggcggGCCaGCGCaacacgaCCGUCGAaCCu -3'
miRNA:   3'- -AGGC-CGGag---CGG-CGCGg------GGCAGCU-GG- -5'
8048 5' -64.9 NC_001973.1 + 100949 0.66 0.570792
Target:  5'- cUCGGCCaccguuuccacgUCGCuCG-GCCUCGUCG-CCu -3'
miRNA:   3'- aGGCCGG------------AGCG-GCgCGGGGCAGCuGG- -5'
8048 5' -64.9 NC_001973.1 + 82499 0.66 0.570792
Target:  5'- -gCGcGCCUUGCCgGCGUCgCGgcCGGCCu -3'
miRNA:   3'- agGC-CGGAGCGG-CGCGGgGCa-GCUGG- -5'
8048 5' -64.9 NC_001973.1 + 37263 0.66 0.561464
Target:  5'- -aCGaGCCUCGCCacgaGCCCCGccaCGAgCCc -3'
miRNA:   3'- agGC-CGGAGCGGcg--CGGGGCa--GCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.