miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8050 3' -64.2 NC_001973.1 + 38428 0.66 0.64039
Target:  5'- gGCGAuuuCGuuGGCG-CGCaCCGCgGCCGu -3'
miRNA:   3'- -CGCU---GCggCUGCgGCG-GGCGgUGGCc -5'
8050 3' -64.2 NC_001973.1 + 5901 0.66 0.64039
Target:  5'- cGCGACGCgaaCGagauccucGCGUCGCCCGCgGUCGc -3'
miRNA:   3'- -CGCUGCG---GC--------UGCGGCGGGCGgUGGCc -5'
8050 3' -64.2 NC_001973.1 + 32788 0.66 0.64039
Target:  5'- uGCGAcuuuuCGCCGcCGCCGCCU-CCGuCCa- -3'
miRNA:   3'- -CGCU-----GCGGCuGCGGCGGGcGGU-GGcc -5'
8050 3' -64.2 NC_001973.1 + 132495 0.66 0.639444
Target:  5'- cGCGACcagcccgGCCaACGCCcacagacacGCCagauagagGCCGCCGGg -3'
miRNA:   3'- -CGCUG-------CGGcUGCGG---------CGGg-------CGGUGGCC- -5'
8050 3' -64.2 NC_001973.1 + 40510 0.66 0.63093
Target:  5'- cGUGACGgCGugGCCccGCuCCGCCAa--- -3'
miRNA:   3'- -CGCUGCgGCugCGG--CG-GGCGGUggcc -5'
8050 3' -64.2 NC_001973.1 + 45094 0.66 0.63093
Target:  5'- uCGAacCGCCGcguGCCGUCCGCCAgCa- -3'
miRNA:   3'- cGCU--GCGGCug-CGGCGGGCGGUgGcc -5'
8050 3' -64.2 NC_001973.1 + 89184 0.66 0.63093
Target:  5'- uGCaGGCGCUG-CGCCGCCCgGCUAg--- -3'
miRNA:   3'- -CG-CUGCGGCuGCGGCGGG-CGGUggcc -5'
8050 3' -64.2 NC_001973.1 + 103981 0.66 0.63093
Target:  5'- gGCG-UGCCGuuGCGaCGCCagcaGCCuaGCCGGg -3'
miRNA:   3'- -CGCuGCGGC--UGCgGCGGg---CGG--UGGCC- -5'
8050 3' -64.2 NC_001973.1 + 113346 0.66 0.63093
Target:  5'- uGCG--GUCGAUGCCGUCCaGCauuuugGCCGGg -3'
miRNA:   3'- -CGCugCGGCUGCGGCGGG-CGg-----UGGCC- -5'
8050 3' -64.2 NC_001973.1 + 131912 0.66 0.63093
Target:  5'- aGCGGCGuuucgaCCGAcCGUucccagaaaCGCCCuaugcacgGCCGCCGGu -3'
miRNA:   3'- -CGCUGC------GGCU-GCG---------GCGGG--------CGGUGGCC- -5'
8050 3' -64.2 NC_001973.1 + 36528 0.66 0.63093
Target:  5'- cGCcGCGCCcACGCCGCUC-UC-CCGGc -3'
miRNA:   3'- -CGcUGCGGcUGCGGCGGGcGGuGGCC- -5'
8050 3' -64.2 NC_001973.1 + 103217 0.66 0.63093
Target:  5'- uGCGcaacuCGCCGACGaCgGCggaCGCCAUCGc -3'
miRNA:   3'- -CGCu----GCGGCUGC-GgCGg--GCGGUGGCc -5'
8050 3' -64.2 NC_001973.1 + 158269 0.66 0.63093
Target:  5'- cGCGACGCgCccuCGCCGUCCcccucGCCcgaGCCGa -3'
miRNA:   3'- -CGCUGCG-Gcu-GCGGCGGG-----CGG---UGGCc -5'
8050 3' -64.2 NC_001973.1 + 158028 0.66 0.628092
Target:  5'- gGUGuGCGCCGcCGCCgcGCCCGUgcguagcgacgacuCGCCGa -3'
miRNA:   3'- -CGC-UGCGGCuGCGG--CGGGCG--------------GUGGCc -5'
8050 3' -64.2 NC_001973.1 + 5759 0.66 0.621471
Target:  5'- aGCGGCcCaCGGCGCuaCGCgCGUCGCCGu -3'
miRNA:   3'- -CGCUGcG-GCUGCG--GCGgGCGGUGGCc -5'
8050 3' -64.2 NC_001973.1 + 36299 0.66 0.621471
Target:  5'- aGCG-CGCCuacaacacgGGCGCCGCggccgaCGCgGCCGa -3'
miRNA:   3'- -CGCuGCGG---------CUGCGGCGg-----GCGgUGGCc -5'
8050 3' -64.2 NC_001973.1 + 95836 0.66 0.621471
Target:  5'- gGCG-CGgCGACGg-GCCCGgUGCCGGg -3'
miRNA:   3'- -CGCuGCgGCUGCggCGGGCgGUGGCC- -5'
8050 3' -64.2 NC_001973.1 + 113585 0.66 0.621471
Target:  5'- cCGGUGCCGGCGCUGC-CGCuCACgaacaCGGg -3'
miRNA:   3'- cGCUGCGGCUGCGGCGgGCG-GUG-----GCC- -5'
8050 3' -64.2 NC_001973.1 + 48081 0.66 0.621471
Target:  5'- cGCGuucACGCUGcgguACG-UGCUCGCCGCCGa -3'
miRNA:   3'- -CGC---UGCGGC----UGCgGCGGGCGGUGGCc -5'
8050 3' -64.2 NC_001973.1 + 101965 0.66 0.621471
Target:  5'- gGUGGCGgCGACGauGCgCGCCAgCGu -3'
miRNA:   3'- -CGCUGCgGCUGCggCGgGCGGUgGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.