miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8050 5' -52.6 NC_001973.1 + 33988 0.66 0.984378
Target:  5'- cAGCgAGUUGAugcgguuguCGAGCGcgUCGUccacggcccGGUCGa -3'
miRNA:   3'- -UCGgUCAACUu--------GCUCGU--AGCA---------CCAGC- -5'
8050 5' -52.6 NC_001973.1 + 42040 0.66 0.980353
Target:  5'- uGGCCgAGgUGAgcGCGGGCAguuUCGUGGg-- -3'
miRNA:   3'- -UCGG-UCaACU--UGCUCGU---AGCACCagc -5'
8050 5' -52.6 NC_001973.1 + 80393 0.67 0.970061
Target:  5'- uAGCCGcaccacgagucGUUGAGCGuuuuGCAcaCGUGGUCc -3'
miRNA:   3'- -UCGGU-----------CAACUUGCu---CGUa-GCACCAGc -5'
8050 5' -52.6 NC_001973.1 + 115796 0.67 0.970061
Target:  5'- aAGCCAGccucGGCGAGCAcuuugcCGUGGUgGa -3'
miRNA:   3'- -UCGGUCaac-UUGCUCGUa-----GCACCAgC- -5'
8050 5' -52.6 NC_001973.1 + 52160 0.67 0.960147
Target:  5'- cAGCCGGUgggcgccguacuUGGcgACGAGCG-CGgcggGGUCGc -3'
miRNA:   3'- -UCGGUCA------------ACU--UGCUCGUaGCa---CCAGC- -5'
8050 5' -52.6 NC_001973.1 + 152493 0.69 0.911711
Target:  5'- aAGCCGGacgagGAGCGGGC-UCGaUGGuUCGa -3'
miRNA:   3'- -UCGGUCaa---CUUGCUCGuAGC-ACC-AGC- -5'
8050 5' -52.6 NC_001973.1 + 22755 0.69 0.905514
Target:  5'- uGCgAGggGGGCGAGCucgacAUCGaccUGGUCGg -3'
miRNA:   3'- uCGgUCaaCUUGCUCG-----UAGC---ACCAGC- -5'
8050 5' -52.6 NC_001973.1 + 79617 0.72 0.804481
Target:  5'- aGGCUgugauAGUUG-ACGGGCGUCGUcgccgGGUCGu -3'
miRNA:   3'- -UCGG-----UCAACuUGCUCGUAGCA-----CCAGC- -5'
8050 5' -52.6 NC_001973.1 + 7049 0.74 0.697264
Target:  5'- gAGUCGGUcgUGAACGAGCugcgCGcccUGGUCGa -3'
miRNA:   3'- -UCGGUCA--ACUUGCUCGua--GC---ACCAGC- -5'
8050 5' -52.6 NC_001973.1 + 62600 0.75 0.666291
Target:  5'- cGUCGcucGAGCGAcGCGUCGUGGUCGa -3'
miRNA:   3'- uCGGUcaaCUUGCU-CGUAGCACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.