miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8051 3' -55.3 NC_001973.1 + 73820 0.67 0.873629
Target:  5'- ---cGGUGcGCCCGACGaaGgcGACCUCg -3'
miRNA:   3'- aaacUCGC-CGGGCUGCg-CauUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 108529 0.67 0.873629
Target:  5'- -cUGAacGCGGCCCGAgGCGacAACgaaCUCg -3'
miRNA:   3'- aaACU--CGCCGGGCUgCGCauUUG---GAG- -5'
8051 3' -55.3 NC_001973.1 + 61171 0.67 0.866152
Target:  5'- --cGGGCGGUcgCCGACGCu----CCUCg -3'
miRNA:   3'- aaaCUCGCCG--GGCUGCGcauuuGGAG- -5'
8051 3' -55.3 NC_001973.1 + 66931 0.67 0.866152
Target:  5'- ---cAGCGGCCaGACGCGUcucAACCa- -3'
miRNA:   3'- aaacUCGCCGGgCUGCGCAu--UUGGag -5'
8051 3' -55.3 NC_001973.1 + 76470 0.67 0.858459
Target:  5'- -aUGGGCGGCUCGGCG-GU--GCC-Cg -3'
miRNA:   3'- aaACUCGCCGGGCUGCgCAuuUGGaG- -5'
8051 3' -55.3 NC_001973.1 + 37900 0.67 0.858459
Target:  5'- --gGAGgGcGCCgGGCGCGgcAagacGCCUCg -3'
miRNA:   3'- aaaCUCgC-CGGgCUGCGCauU----UGGAG- -5'
8051 3' -55.3 NC_001973.1 + 121548 0.68 0.83998
Target:  5'- --cGAGCGGCgUCGGCGCGUGugguggaacacguaCUCg -3'
miRNA:   3'- aaaCUCGCCG-GGCUGCGCAUuug-----------GAG- -5'
8051 3' -55.3 NC_001973.1 + 6437 0.68 0.834148
Target:  5'- --cGAGCGcGCCCGuCGCcgGAGCCg- -3'
miRNA:   3'- aaaCUCGC-CGGGCuGCGcaUUUGGag -5'
8051 3' -55.3 NC_001973.1 + 19034 0.68 0.833307
Target:  5'- -cUGAGCGGCgaGACGCucgaGUuccgcucGGACCUCc -3'
miRNA:   3'- aaACUCGCCGggCUGCG----CA-------UUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 133304 0.68 0.816985
Target:  5'- ---cGGCGGCgCCGucGCGCGgcgAAACUUCa -3'
miRNA:   3'- aaacUCGCCG-GGC--UGCGCa--UUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 117505 0.69 0.789972
Target:  5'- cUUUG-GCcGCCggCGGCGCGUAGACUUCc -3'
miRNA:   3'- -AAACuCGcCGG--GCUGCGCAUUUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 4249 0.69 0.789972
Target:  5'- -gUGAGCGGCgCGuACGCGaacAGCCg- -3'
miRNA:   3'- aaACUCGCCGgGC-UGCGCau-UUGGag -5'
8051 3' -55.3 NC_001973.1 + 105483 0.7 0.742158
Target:  5'- -aUGAuGUGGCCgGGCGCGUu-GCCg- -3'
miRNA:   3'- aaACU-CGCCGGgCUGCGCAuuUGGag -5'
8051 3' -55.3 NC_001973.1 + 122619 0.7 0.722275
Target:  5'- ---cGGCGGCgCCGACGCGggcGCCg- -3'
miRNA:   3'- aaacUCGCCG-GGCUGCGCauuUGGag -5'
8051 3' -55.3 NC_001973.1 + 63959 0.7 0.712209
Target:  5'- ---cGGCGGCUCGGCaaCGUGAACCUg -3'
miRNA:   3'- aaacUCGCCGGGCUGc-GCAUUUGGAg -5'
8051 3' -55.3 NC_001973.1 + 34985 0.71 0.671342
Target:  5'- -gUGuGCGuGCCCG-CGCGUuu-CCUCg -3'
miRNA:   3'- aaACuCGC-CGGGCuGCGCAuuuGGAG- -5'
8051 3' -55.3 NC_001973.1 + 80462 0.71 0.671342
Target:  5'- ---cGGCGGUCCGGCGCcagcucGGCCUCg -3'
miRNA:   3'- aaacUCGCCGGGCUGCGcau---UUGGAG- -5'
8051 3' -55.3 NC_001973.1 + 24180 0.71 0.650675
Target:  5'- ----uGCGGCCgCGGCGCGUcAGCgUCa -3'
miRNA:   3'- aaacuCGCCGG-GCUGCGCAuUUGgAG- -5'
8051 3' -55.3 NC_001973.1 + 59009 0.72 0.640315
Target:  5'- --cGAGCGGCgCCGACGUGUucuuuuCCg- -3'
miRNA:   3'- aaaCUCGCCG-GGCUGCGCAuuu---GGag -5'
8051 3' -55.3 NC_001973.1 + 36327 0.72 0.629947
Target:  5'- --cGAcGCGG-CCGACGCGg--GCCUCg -3'
miRNA:   3'- aaaCU-CGCCgGGCUGCGCauuUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.