miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8051 5' -49.3 NC_001973.1 + 72899 0.68 0.994378
Target:  5'- ---cGcgCUCGUCGGGCgcgGAGCacgCGa -3'
miRNA:   3'- cguaCuaGAGUAGCCCGaa-CUUGa--GC- -5'
8051 5' -49.3 NC_001973.1 + 10702 0.68 0.994378
Target:  5'- ---cGAUCUCggCGGGCg---GCUCGa -3'
miRNA:   3'- cguaCUAGAGuaGCCCGaacuUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 101628 0.68 0.990092
Target:  5'- gGCAcGAUCUCGUUGGcGCcgUUGAagcacugcacGCUCGc -3'
miRNA:   3'- -CGUaCUAGAGUAGCC-CG--AACU----------UGAGC- -5'
8051 5' -49.3 NC_001973.1 + 19896 0.69 0.988697
Target:  5'- aGCGUGAUCUUGUUGuGCcgcgccUUGAACUUGu -3'
miRNA:   3'- -CGUACUAGAGUAGCcCG------AACUUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 113382 0.69 0.981115
Target:  5'- uGC-UGAUCUCGUCgaugaugacgcaccuGGGCUUGAcgggcagcggcgugcACUUGg -3'
miRNA:   3'- -CGuACUAGAGUAG---------------CCCGAACU---------------UGAGC- -5'
8051 5' -49.3 NC_001973.1 + 143394 0.7 0.971442
Target:  5'- aGCAcGuUCUUGUCGGGCaggUUGGugUCGa -3'
miRNA:   3'- -CGUaCuAGAGUAGCCCG---AACUugAGC- -5'
8051 5' -49.3 NC_001973.1 + 55896 0.72 0.945166
Target:  5'- gGCAgg--CUCGggcUCGGGCUcGGGCUCGg -3'
miRNA:   3'- -CGUacuaGAGU---AGCCCGAaCUUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 115017 0.75 0.839088
Target:  5'- gGCAUGAUgUCAUCGG-UUUGAACcCGa -3'
miRNA:   3'- -CGUACUAgAGUAGCCcGAACUUGaGC- -5'
8051 5' -49.3 NC_001973.1 + 114783 0.76 0.812673
Target:  5'- gGCGUGAUgUCAUCGG-CUUGAcCUCc -3'
miRNA:   3'- -CGUACUAgAGUAGCCcGAACUuGAGc -5'
8051 5' -49.3 NC_001973.1 + 114629 0.76 0.775016
Target:  5'- gGCAUGAUgUCAUCGG-CUUGAcCUCc -3'
miRNA:   3'- -CGUACUAgAGUAGCCcGAACUuGAGc -5'
8051 5' -49.3 NC_001973.1 + 40891 0.82 0.484755
Target:  5'- gGCAUGAUCUCAUCuGaUUUGAACUCGa -3'
miRNA:   3'- -CGUACUAGAGUAGcCcGAACUUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 114939 0.86 0.325488
Target:  5'- gGCAUGAUgUCAUC-GGCUUGAACUCu -3'
miRNA:   3'- -CGUACUAgAGUAGcCCGAACUUGAGc -5'
8051 5' -49.3 NC_001973.1 + 40812 0.9 0.183156
Target:  5'- aGCGUGAUCUCAUCGGGCgUGAcCUCc -3'
miRNA:   3'- -CGUACUAGAGUAGCCCGaACUuGAGc -5'
8051 5' -49.3 NC_001973.1 + 40969 0.94 0.119526
Target:  5'- gGCAUGAUCUCAUCGGaUUUGAACUCGa -3'
miRNA:   3'- -CGUACUAGAGUAGCCcGAACUUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 114861 0.94 0.113197
Target:  5'- gGCAUGAUCUCAUC-GGCUUGAACUCu -3'
miRNA:   3'- -CGUACUAGAGUAGcCCGAACUUGAGc -5'
8051 5' -49.3 NC_001973.1 + 114707 0.98 0.061559
Target:  5'- gGCGUGAUgUCAUCGGGUUUGAACUCGa -3'
miRNA:   3'- -CGUACUAgAGUAGCCCGAACUUGAGC- -5'
8051 5' -49.3 NC_001973.1 + 41048 1.03 0.034979
Target:  5'- gGCAUGAUCUCAUCGGGCUUGAACcCGa -3'
miRNA:   3'- -CGUACUAGAGUAGCCCGAACUUGaGC- -5'
8051 5' -49.3 NC_001973.1 + 114550 1.08 0.015258
Target:  5'- gGCAUGAUCUCAUCGGGCUUGAACUCu -3'
miRNA:   3'- -CGUACUAGAGUAGCCCGAACUUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.