miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 3' -54.4 NC_001973.1 + 129000 0.73 0.59927
Target:  5'- aGGAUUUUACGCGUCGGCCaGGgUCGAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGcUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 160640 0.73 0.588759
Target:  5'- aAGAUUUUACGCGUCGGCUagggucaacaGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGG----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12366 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCaagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 16379 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 20981 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130892 0.73 0.567846
Target:  5'- aGGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 160561 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72045 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCgagggucaauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 16535 0.73 0.557458
Target:  5'- aAGAUUUUACGCGUCGGCuagggucgauCGAGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 129166 0.74 0.506468
Target:  5'- aGGAUCUUACGCGUCGGCaagggucaaugGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGg----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 151085 0.75 0.486624
Target:  5'- aGGAUCCUACGCGcCcGCCGGGgUCGu -3'
miRNA:   3'- -UUUAGGAUGCGCaGuCGGCUCgAGUu -5'
8052 3' -54.4 NC_001973.1 + 160405 0.75 0.467156
Target:  5'- aAGAUUUUACGCGUCGGCCggugucgaucGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGG----------CUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 130716 0.76 0.411322
Target:  5'- aGGAUUUUACGCGUCGGCCGGGgcaaUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCGGCUCg---AGUU- -5'
8052 3' -54.4 NC_001973.1 + 114753 0.76 0.411322
Target:  5'- uAAAUCUUACGCGUCcG-CGAGCUCAGu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCgGCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12131 0.77 0.393649
Target:  5'- aGGAUUUUACGCGUCuGCCGGGgUCAAu -3'
miRNA:   3'- -UUUAGGAUGCGCAGuCGGCUCgAGUU- -5'
8052 3' -54.4 NC_001973.1 + 129245 0.77 0.376476
Target:  5'- aAGAUCUUACGCGUCGGCaagggucauCGGGUUCAAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG---------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 12506 0.77 0.35168
Target:  5'- gGAggUUUACGCGUCGGCCG-GCUCAAa -3'
miRNA:   3'- -UUuaGGAUGCGCAGUCGGCuCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 72140 0.78 0.320459
Target:  5'- aGGAUCUUACGCGUCGGCaaaggucgauCGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 71958 0.78 0.312985
Target:  5'- aAGAUCUUACGCGUCGGCgagggucaauCGAGUUCAAa -3'
miRNA:   3'- -UUUAGGAUGCGCAGUCG----------GCUCGAGUU- -5'
8052 3' -54.4 NC_001973.1 + 114907 0.81 0.227735
Target:  5'- aAAAUCUUACGCGUCcaCCGAGCUCGAg -3'
miRNA:   3'- -UUUAGGAUGCGCAGucGGCUCGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.