miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8052 5' -49.2 NC_001973.1 + 94864 0.67 0.995125
Target:  5'- ---cGACCCgcUGCCGuacgACGCGUGGc-- -3'
miRNA:   3'- cuaaCUGGGa-ACGGC----UGCGCAUUuua -5'
8052 5' -49.2 NC_001973.1 + 12190 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 20962 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160464 0.67 0.995125
Target:  5'- --cUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 151062 0.67 0.993392
Target:  5'- ---aGACUCgagcucgGCgGACGCGUAGGAUc -3'
miRNA:   3'- cuaaCUGGGaa-----CGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 160542 0.68 0.991198
Target:  5'- --cUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 127356 0.68 0.991198
Target:  5'- --cUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cuaACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 87235 0.68 0.991198
Target:  5'- cGUUGACCa-UGCCGcACGCGUu---- -3'
miRNA:   3'- cUAACUGGgaACGGC-UGCGCAuuuua -5'
8052 5' -49.2 NC_001973.1 + 150953 0.68 0.989903
Target:  5'- ---aGACUCgagcucgGCgGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGaa-----CGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 2086 0.69 0.985116
Target:  5'- ---cGACUCUUccgcaaucGCCGGCGCGUAc--- -3'
miRNA:   3'- cuaaCUGGGAA--------CGGCUGCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 47798 0.69 0.981071
Target:  5'- ---cGGCCgCgccgGCCGACGCGUGc--- -3'
miRNA:   3'- cuaaCUGG-Gaa--CGGCUGCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 2798 0.7 0.967436
Target:  5'- aAUUGAgCUcgGCgGACGCGUAGGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 111955 0.7 0.964037
Target:  5'- ---cGACCCggcgGCCGAgCGCGUGc--- -3'
miRNA:   3'- cuaaCUGGGaa--CGGCU-GCGCAUuuua -5'
8052 5' -49.2 NC_001973.1 + 72206 0.71 0.938413
Target:  5'- aGUUGAgCUcgGCgGACGCGUAAGAUu -3'
miRNA:   3'- cUAACUgGGaaCGgCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 12424 0.72 0.922067
Target:  5'- -cUUGAgCUcgGCUGACGCGUAGGAUu -3'
miRNA:   3'- cuAACUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 2683 0.74 0.866926
Target:  5'- ---cGAgCUcgGCCGACGCGUAAAAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 150900 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUc -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 72365 0.74 0.858915
Target:  5'- ---cGAgCUcgGCCGACGCGUAAGAUu -3'
miRNA:   3'- cuaaCUgGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 19690 0.74 0.850675
Target:  5'- ----cGCCUcgGCCGGCGCGUAAAAUc -3'
miRNA:   3'- cuaacUGGGaaCGGCUGCGCAUUUUA- -5'
8052 5' -49.2 NC_001973.1 + 114657 0.74 0.842214
Target:  5'- ---cGACCCUUGCCGcCaCGUAAAAUc -3'
miRNA:   3'- cuaaCUGGGAACGGCuGcGCAUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.