miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8053 3' -53.9 NC_001973.1 + 56410 0.66 0.967294
Target:  5'- ----aGCCGAGCUCGGUaucGGGCu-- -3'
miRNA:   3'- gcaggCGGCUCGAGUCAaa-UCCGuac -5'
8053 3' -53.9 NC_001973.1 + 4871 0.66 0.960546
Target:  5'- -uUCCGCCGuGCUCGuacaaGGGCAg- -3'
miRNA:   3'- gcAGGCGGCuCGAGUcaaa-UCCGUac -5'
8053 3' -53.9 NC_001973.1 + 40751 0.66 0.956835
Target:  5'- uCG-CCGCgGAcgcgcugcccGCUCGcUUUAGGCGUGa -3'
miRNA:   3'- -GCaGGCGgCU----------CGAGUcAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 24275 0.66 0.952893
Target:  5'- uGUCCGCgCGGGCgccUCGGcgaaUGGGCGa- -3'
miRNA:   3'- gCAGGCG-GCUCG---AGUCaa--AUCCGUac -5'
8053 3' -53.9 NC_001973.1 + 5436 0.67 0.939642
Target:  5'- gCGUCCaaggaGCCGAGCUCGGgca--GCAg- -3'
miRNA:   3'- -GCAGG-----CGGCUCGAGUCaaaucCGUac -5'
8053 3' -53.9 NC_001973.1 + 150928 0.68 0.90019
Target:  5'- gCGUCCGCCGGGgUC-GUUggAGGuCAg- -3'
miRNA:   3'- -GCAGGCGGCUCgAGuCAAa-UCC-GUac -5'
8053 3' -53.9 NC_001973.1 + 29961 0.68 0.90019
Target:  5'- cCGUacagagaCGCCG-GCUCGGUggUGGGCGc- -3'
miRNA:   3'- -GCAg------GCGGCuCGAGUCAa-AUCCGUac -5'
8053 3' -53.9 NC_001973.1 + 105938 0.69 0.857118
Target:  5'- uCGUCCGCguCGAGCUUcuucaGGUgcacgUAGGCGa- -3'
miRNA:   3'- -GCAGGCG--GCUCGAG-----UCAa----AUCCGUac -5'
8053 3' -53.9 NC_001973.1 + 96029 0.7 0.824157
Target:  5'- aGUacgCGCgCGAGCUCGGgcUGGGCGg- -3'
miRNA:   3'- gCAg--GCG-GCUCGAGUCaaAUCCGUac -5'
8053 3' -53.9 NC_001973.1 + 71772 0.71 0.788331
Target:  5'- cCG-CCGCCGAGCUCG----AGGCcgGc -3'
miRNA:   3'- -GCaGGCGGCUCGAGUcaaaUCCGuaC- -5'
8053 3' -53.9 NC_001973.1 + 115053 0.71 0.754098
Target:  5'- gCGUCCGCCGAGCUCGagcaaacccgauuccGgccucGGCGUc -3'
miRNA:   3'- -GCAGGCGGCUCGAGU---------------Caaau-CCGUAc -5'
8053 3' -53.9 NC_001973.1 + 21281 0.73 0.669424
Target:  5'- gCGUCCGCCGGGCcgucgcUCAGUcgucGGGCuUGc -3'
miRNA:   3'- -GCAGGCGGCUCG------AGUCAaa--UCCGuAC- -5'
8053 3' -53.9 NC_001973.1 + 41105 0.83 0.214458
Target:  5'- gCGUCCGCCGAGCUCgAGUUUGGuCAUu -3'
miRNA:   3'- -GCAGGCGGCUCGAG-UCAAAUCcGUAc -5'
8053 3' -53.9 NC_001973.1 + 114917 0.9 0.079331
Target:  5'- gCGUCCaCCGAGCUCgAGUUUGGGCAUGa -3'
miRNA:   3'- -GCAGGcGGCUCGAG-UCAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 114685 0.93 0.051276
Target:  5'- gCGcCCGCCGAGCUCgAGUUUGGGCGUGa -3'
miRNA:   3'- -GCaGGCGGCUCGAG-UCAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 114607 0.95 0.038924
Target:  5'- gCGUCCGCCGAGCUCaAGUUaAGGCAUGa -3'
miRNA:   3'- -GCAGGCGGCUCGAG-UCAAaUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 114763 0.95 0.036829
Target:  5'- gCGUCCG-CGAGCUCAGUUUAGGCGUGa -3'
miRNA:   3'- -GCAGGCgGCUCGAGUCAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 114995 1.02 0.014281
Target:  5'- gCGUCCGCCGAGCUCgAGUUUGGGCAUGa -3'
miRNA:   3'- -GCAGGCGGCUCGAG-UCAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 114839 1.02 0.014281
Target:  5'- gCGUCCGCCGAGCUCgAGUUUGGGCAUGa -3'
miRNA:   3'- -GCAGGCGGCUCGAG-UCAAAUCCGUAC- -5'
8053 3' -53.9 NC_001973.1 + 41026 1.02 0.014281
Target:  5'- gCGUCCGCCGAGCUCAGUUUgGGGCAUGa -3'
miRNA:   3'- -GCAGGCGGCUCGAGUCAAA-UCCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.