miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8054 5' -57.2 NC_001973.1 + 56513 0.66 0.871737
Target:  5'- cGGGGCGgGCuCGgcgccaagcUCGGGCGgggcgGGCUCg -3'
miRNA:   3'- uUCCUGCgCG-GC---------AGCCUGUa----UCGAGa -5'
8054 5' -57.2 NC_001973.1 + 56459 0.66 0.871737
Target:  5'- cGGGGCGgGCuCGgcgccaagcUCGGGCGgggcgGGCUCg -3'
miRNA:   3'- uUCCUGCgCG-GC---------AGCCUGUa----UCGAGa -5'
8054 5' -57.2 NC_001973.1 + 97870 0.66 0.871737
Target:  5'- aGGGGGC-CGUCGU-GGGCGUAGCa-- -3'
miRNA:   3'- -UUCCUGcGCGGCAgCCUGUAUCGaga -5'
8054 5' -57.2 NC_001973.1 + 21551 0.66 0.871737
Target:  5'- -cGGGCGCGCCGUggucccggcgcgCGGGguUGaaguGCUCg -3'
miRNA:   3'- uuCCUGCGCGGCA------------GCCUguAU----CGAGa -5'
8054 5' -57.2 NC_001973.1 + 55335 0.66 0.848879
Target:  5'- -cGGGUGCGCCGUCaGcGCGgAGCUCa -3'
miRNA:   3'- uuCCUGCGCGGCAGcC-UGUaUCGAGa -5'
8054 5' -57.2 NC_001973.1 + 61124 0.66 0.848879
Target:  5'- cGGGGCGCGgCGUCGcuccucgAGCUCg -3'
miRNA:   3'- uUCCUGCGCgGCAGCcugua--UCGAGa -5'
8054 5' -57.2 NC_001973.1 + 2888 0.66 0.84086
Target:  5'- -cGGACGCGCguCGUCGcGCuuuGCUCg -3'
miRNA:   3'- uuCCUGCGCG--GCAGCcUGuauCGAGa -5'
8054 5' -57.2 NC_001973.1 + 159087 0.66 0.84086
Target:  5'- cGGGACGCGCUG-CGaaucaaacuGGCGUuGCUCg -3'
miRNA:   3'- uUCCUGCGCGGCaGC---------CUGUAuCGAGa -5'
8054 5' -57.2 NC_001973.1 + 124268 0.66 0.832652
Target:  5'- -uGGACGUGggcCCGUCGGcCGacGCUCUg -3'
miRNA:   3'- uuCCUGCGC---GGCAGCCuGUauCGAGA- -5'
8054 5' -57.2 NC_001973.1 + 73715 0.67 0.824263
Target:  5'- -cGGGCGCGCCGUCGuaaa-AGCUg- -3'
miRNA:   3'- uuCCUGCGCGGCAGCcuguaUCGAga -5'
8054 5' -57.2 NC_001973.1 + 37776 0.67 0.8157
Target:  5'- cGGGGgGCGCCGcCGcGCGgcGCUCUc -3'
miRNA:   3'- uUCCUgCGCGGCaGCcUGUauCGAGA- -5'
8054 5' -57.2 NC_001973.1 + 53519 0.67 0.8157
Target:  5'- -cGGcCGCGCCGUCGGGCcu-GUa-- -3'
miRNA:   3'- uuCCuGCGCGGCAGCCUGuauCGaga -5'
8054 5' -57.2 NC_001973.1 + 111265 0.68 0.770567
Target:  5'- -cGGACGCGCUGcccgugggcaacUCGGugGUGGUg-- -3'
miRNA:   3'- uuCCUGCGCGGC------------AGCCugUAUCGaga -5'
8054 5' -57.2 NC_001973.1 + 81046 0.68 0.770567
Target:  5'- cGGGcCGCGUCGaCGGGCGUGcGCUUc -3'
miRNA:   3'- uUCCuGCGCGGCaGCCUGUAU-CGAGa -5'
8054 5' -57.2 NC_001973.1 + 120479 0.68 0.766809
Target:  5'- gAAGGACGacaacuucgacauCGCCGagcggcaccuuuugUCGGACGaGGCUCg -3'
miRNA:   3'- -UUCCUGC-------------GCGGC--------------AGCCUGUaUCGAGa -5'
8054 5' -57.2 NC_001973.1 + 123063 0.68 0.751593
Target:  5'- cGGGACGCGCUcucgccCGGGCGagcAGCUCg -3'
miRNA:   3'- uUCCUGCGCGGca----GCCUGUa--UCGAGa -5'
8054 5' -57.2 NC_001973.1 + 26042 0.69 0.702489
Target:  5'- -cGGGCgaguaGCGCUugugGUCGGACAUGGCgUCg -3'
miRNA:   3'- uuCCUG-----CGCGG----CAGCCUGUAUCG-AGa -5'
8054 5' -57.2 NC_001973.1 + 103978 0.69 0.692455
Target:  5'- cGGGGCGUGCCGUUGcGACGccAGCa-- -3'
miRNA:   3'- uUCCUGCGCGGCAGC-CUGUa-UCGaga -5'
8054 5' -57.2 NC_001973.1 + 107552 0.69 0.672246
Target:  5'- -cGGGCGCGCCGaCG-ACccgAGCUCUg -3'
miRNA:   3'- uuCCUGCGCGGCaGCcUGua-UCGAGA- -5'
8054 5' -57.2 NC_001973.1 + 67429 0.7 0.611104
Target:  5'- uAGGAgacuuCGCGCagGUCGGGCAccgGGCUCg -3'
miRNA:   3'- uUCCU-----GCGCGg-CAGCCUGUa--UCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.