miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8055 3' -60 NC_001973.1 + 115468 0.79 0.163989
Target:  5'- gCGACUGCgccgcgUGCUGACGCAGCGCg-- -3'
miRNA:   3'- aGCUGGCGa-----GCGACUGCGUCGCGguc -5'
8055 3' -60 NC_001973.1 + 105715 0.77 0.194562
Target:  5'- -aGACCGCcUGCaGGCGCGGCGCCGu -3'
miRNA:   3'- agCUGGCGaGCGaCUGCGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 108740 0.77 0.214191
Target:  5'- gUCGuCgCGCUCGUcGACGCGGCGCgGGg -3'
miRNA:   3'- -AGCuG-GCGAGCGaCUGCGUCGCGgUC- -5'
8055 3' -60 NC_001973.1 + 123515 0.77 0.219357
Target:  5'- aCGGCgCGCUCGCcGGCGCAGUGCa-- -3'
miRNA:   3'- aGCUG-GCGAGCGaCUGCGUCGCGguc -5'
8055 3' -60 NC_001973.1 + 98239 0.74 0.303278
Target:  5'- aUCGAuauUCGuCUCGCUG-CGCGGCGCUGGu -3'
miRNA:   3'- -AGCU---GGC-GAGCGACuGCGUCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 15980 0.74 0.335784
Target:  5'- gCGACCGCUCGaccgaaaCUGAgCGCgccggacgaccgauGGCGCCAGc -3'
miRNA:   3'- aGCUGGCGAGC-------GACU-GCG--------------UCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 47797 0.73 0.361401
Target:  5'- cCGGCCGCgccgGCcGACGCGuGCGCCAa -3'
miRNA:   3'- aGCUGGCGag--CGaCUGCGU-CGCGGUc -5'
8055 3' -60 NC_001973.1 + 52860 0.73 0.361401
Target:  5'- gCGGCCGgUCgguccaGCUGGCGCcGCGCCGa -3'
miRNA:   3'- aGCUGGCgAG------CGACUGCGuCGCGGUc -5'
8055 3' -60 NC_001973.1 + 31719 0.72 0.401475
Target:  5'- cUGGCUGCcguugCGC-GACaGCAGCGCCGGg -3'
miRNA:   3'- aGCUGGCGa----GCGaCUG-CGUCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 49270 0.72 0.418278
Target:  5'- aCGACCa--CGCUGcACGCGGCGCUGGu -3'
miRNA:   3'- aGCUGGcgaGCGAC-UGCGUCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 43743 0.71 0.444264
Target:  5'- gCGACCGCgUCGgugacgaucuccCUGACGC-GCGCCGc -3'
miRNA:   3'- aGCUGGCG-AGC------------GACUGCGuCGCGGUc -5'
8055 3' -60 NC_001973.1 + 53842 0.71 0.444264
Target:  5'- aCGACCgaGCUCGCcccggcGGCgGCGGCGCCGc -3'
miRNA:   3'- aGCUGG--CGAGCGa-----CUG-CGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 120795 0.71 0.453126
Target:  5'- gCGugCGCgcgcUGCUGACGCAcuacgaucGCGCCGu -3'
miRNA:   3'- aGCugGCGa---GCGACUGCGU--------CGCGGUc -5'
8055 3' -60 NC_001973.1 + 6208 0.71 0.471133
Target:  5'- cCGGCgGCgcggUGCcGGCGCGGCGCCc- -3'
miRNA:   3'- aGCUGgCGa---GCGaCUGCGUCGCGGuc -5'
8055 3' -60 NC_001973.1 + 68618 0.71 0.480272
Target:  5'- -aGGCCGaccaGCUGACGCAauGgGCCAGa -3'
miRNA:   3'- agCUGGCgag-CGACUGCGU--CgCGGUC- -5'
8055 3' -60 NC_001973.1 + 133277 0.7 0.498802
Target:  5'- cUCGGCCGCggccgagaaCGCggccGGCgGCGGCGCCGu -3'
miRNA:   3'- -AGCUGGCGa--------GCGa---CUG-CGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 109855 0.7 0.498802
Target:  5'- gUCG-CCGC-CGCcgacgagGACGCGGCGCgCGGc -3'
miRNA:   3'- -AGCuGGCGaGCGa------CUGCGUCGCG-GUC- -5'
8055 3' -60 NC_001973.1 + 152311 0.7 0.508187
Target:  5'- aUCGAgCgCGCUCGUuaucgugGACGCGGUGCgCGGg -3'
miRNA:   3'- -AGCU-G-GCGAGCGa------CUGCGUCGCG-GUC- -5'
8055 3' -60 NC_001973.1 + 16195 0.7 0.517644
Target:  5'- -aGGCCGCUagagcgCGCUGcGCGUucAGCGCCAc -3'
miRNA:   3'- agCUGGCGA------GCGAC-UGCG--UCGCGGUc -5'
8055 3' -60 NC_001973.1 + 121853 0.7 0.517644
Target:  5'- uUCGGCCGC-CGC-GACGCc-CGCCAc -3'
miRNA:   3'- -AGCUGGCGaGCGaCUGCGucGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.