miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8055 5' -55.1 NC_001973.1 + 32076 0.67 0.855289
Target:  5'- cAGCCcagcGAGAAgGUgGGCGCgGGCAGg- -3'
miRNA:   3'- -UCGG----UUCUUgCGgUCGCGgUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 104501 0.67 0.855289
Target:  5'- -aCgAAGAGCGCCAGCGacucgagCGACAGg- -3'
miRNA:   3'- ucGgUUCUUGCGGUCGCg------GUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 111479 0.67 0.855289
Target:  5'- cGUCAAGuucgucgccGCGCCGGCGCgCGACAa-- -3'
miRNA:   3'- uCGGUUCu--------UGCGGUCGCG-GUUGUcau -5'
8055 5' -55.1 NC_001973.1 + 103943 0.67 0.855289
Target:  5'- cGCgGGGcgUGCCgucgcGGCGCCAGCAGc- -3'
miRNA:   3'- uCGgUUCuuGCGG-----UCGCGGUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 133459 0.67 0.855289
Target:  5'- cGCgCGGGucGCGCacggAGCGCCAGCGGg- -3'
miRNA:   3'- uCG-GUUCu-UGCGg---UCGCGGUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 122625 0.68 0.84722
Target:  5'- cGCCGAcgcGGGCGCCGGCGUCggUcgAGa- -3'
miRNA:   3'- uCGGUU---CUUGCGGUCGCGGuuG--UCau -5'
8055 5' -55.1 NC_001973.1 + 115631 0.68 0.84722
Target:  5'- cAGCgcgaCAAGGAgacCGCCAGCGUgGACAGc- -3'
miRNA:   3'- -UCG----GUUCUU---GCGGUCGCGgUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 95536 0.68 0.84722
Target:  5'- cGCCAucGGCGCCGGCGaCGACAa-- -3'
miRNA:   3'- uCGGUucUUGCGGUCGCgGUUGUcau -5'
8055 5' -55.1 NC_001973.1 + 122678 0.68 0.821819
Target:  5'- gGGCCA-GAACGCgCGGCGauccaaucgCAGCAGUc -3'
miRNA:   3'- -UCGGUuCUUGCG-GUCGCg--------GUUGUCAu -5'
8055 5' -55.1 NC_001973.1 + 118059 0.68 0.81298
Target:  5'- uGGC--AGGACGCCGGCGUCAcguACAcGUAc -3'
miRNA:   3'- -UCGguUCUUGCGGUCGCGGU---UGU-CAU- -5'
8055 5' -55.1 NC_001973.1 + 84321 0.68 0.803969
Target:  5'- cGCCcAGGACGUCAGCuacgGCCGgcuGCAGg- -3'
miRNA:   3'- uCGGuUCUUGCGGUCG----CGGU---UGUCau -5'
8055 5' -55.1 NC_001973.1 + 47657 0.68 0.803969
Target:  5'- cGCCGugcuuGAACGCCAGCcCCGACcuGGa- -3'
miRNA:   3'- uCGGUu----CUUGCGGUCGcGGUUG--UCau -5'
8055 5' -55.1 NC_001973.1 + 53567 0.69 0.794794
Target:  5'- cGGCCAugucugcgacugAGGcgcGCGCCGGCGCCGAgGa-- -3'
miRNA:   3'- -UCGGU------------UCU---UGCGGUCGCGGUUgUcau -5'
8055 5' -55.1 NC_001973.1 + 50097 0.69 0.794794
Target:  5'- cGCCAcggAGGGCGgCGGCGCCGcCGcGUAa -3'
miRNA:   3'- uCGGU---UCUUGCgGUCGCGGUuGU-CAU- -5'
8055 5' -55.1 NC_001973.1 + 31368 0.69 0.766387
Target:  5'- cGCCGcggcGGuguGCGCCAGCGaCGGCAGa- -3'
miRNA:   3'- uCGGU----UCu--UGCGGUCGCgGUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 106650 0.7 0.746808
Target:  5'- cGGCCAAGGuCGCCgaGGCGCuCGACGc-- -3'
miRNA:   3'- -UCGGUUCUuGCGG--UCGCG-GUUGUcau -5'
8055 5' -55.1 NC_001973.1 + 152377 0.7 0.736856
Target:  5'- gAGCC--GGACgGCCGGCGCgGGCGGg- -3'
miRNA:   3'- -UCGGuuCUUG-CGGUCGCGgUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 40593 0.7 0.736856
Target:  5'- aGGCCAGGAuauuggcggagcGCGCCGcCGaCCAGCAGc- -3'
miRNA:   3'- -UCGGUUCU------------UGCGGUcGC-GGUUGUCau -5'
8055 5' -55.1 NC_001973.1 + 123003 0.7 0.726808
Target:  5'- cGGCCAGcauGAGCGCCucgaagGGCGCCGcCAGc- -3'
miRNA:   3'- -UCGGUU---CUUGCGG------UCGCGGUuGUCau -5'
8055 5' -55.1 NC_001973.1 + 108242 0.7 0.726808
Target:  5'- gGGCCAAGGAgaucgacggcUGCCGGCGCgcggaGACGGa- -3'
miRNA:   3'- -UCGGUUCUU----------GCGGUCGCGg----UUGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.