miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8056 3' -54.9 NC_001973.1 + 8846 0.77 0.436152
Target:  5'- -cGCGCUGCUGGcgcgGCGACACGGgcuguuCGAGa -3'
miRNA:   3'- gcUGCGACGACCa---CGUUGUGCU------GCUC- -5'
8056 3' -54.9 NC_001973.1 + 7442 0.76 0.445199
Target:  5'- uCGcACGUgaGCUcggcGGUGCGGCGCGACGAGg -3'
miRNA:   3'- -GC-UGCGa-CGA----CCACGUUGUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 124130 0.74 0.550786
Target:  5'- -cGCGCgaacgGCUGGaGCAccuGCGCGGCGAGg -3'
miRNA:   3'- gcUGCGa----CGACCaCGU---UGUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 67612 0.74 0.591199
Target:  5'- gCGGCGgaGCUGGUGCcggcCGCGucCGAGa -3'
miRNA:   3'- -GCUGCgaCGACCACGuu--GUGCu-GCUC- -5'
8056 3' -54.9 NC_001973.1 + 34470 0.73 0.605479
Target:  5'- uGGCGUUGgUGGUGCAGuuggcgcucacgaacUugGACGAGc -3'
miRNA:   3'- gCUGCGACgACCACGUU---------------GugCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 35688 0.73 0.621845
Target:  5'- gCGGCGC-GgUGGcgGCGauGCGCGACGAGg -3'
miRNA:   3'- -GCUGCGaCgACCa-CGU--UGUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 95420 0.73 0.642327
Target:  5'- --cCGCUGCUGG-GCGACGCGgagcGCGAc -3'
miRNA:   3'- gcuGCGACGACCaCGUUGUGC----UGCUc -5'
8056 3' -54.9 NC_001973.1 + 30371 0.73 0.642327
Target:  5'- cCGGCGCgGCgacucgGGUGCGggccgGCGCGGCGGc -3'
miRNA:   3'- -GCUGCGaCGa-----CCACGU-----UGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 42588 0.72 0.693243
Target:  5'- uGACGgUGCUcgccaaggaGGUGCGGCGCGAgGGc -3'
miRNA:   3'- gCUGCgACGA---------CCACGUUGUGCUgCUc -5'
8056 3' -54.9 NC_001973.1 + 22497 0.72 0.693243
Target:  5'- aCGAgGCUGCc-GUGCGuGCGCGACGAc -3'
miRNA:   3'- -GCUgCGACGacCACGU-UGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 81815 0.72 0.703308
Target:  5'- cCGGCGCcGCcGGcgGCGACgagACGACGAGc -3'
miRNA:   3'- -GCUGCGaCGaCCa-CGUUG---UGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 5867 0.71 0.710319
Target:  5'- cCGGCGUcucgagagGCUGGUGCGgcgcagcgcgcgcgACGCGaACGAGa -3'
miRNA:   3'- -GCUGCGa-------CGACCACGU--------------UGUGC-UGCUC- -5'
8056 3' -54.9 NC_001973.1 + 86866 0.71 0.713314
Target:  5'- -cGCGCUGCggcaUGGUcgucgugaagcuGCAGCGCGGCGAc -3'
miRNA:   3'- gcUGCGACG----ACCA------------CGUUGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 117562 0.71 0.75255
Target:  5'- aCGACGaCUGCgagugGGcGCGuuuCAUGGCGAGa -3'
miRNA:   3'- -GCUGC-GACGa----CCaCGUu--GUGCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 89754 0.71 0.762116
Target:  5'- -cACGUUGCgcgGGUGCAGgucCAcCGACGAGu -3'
miRNA:   3'- gcUGCGACGa--CCACGUU---GU-GCUGCUC- -5'
8056 3' -54.9 NC_001973.1 + 73810 0.7 0.780894
Target:  5'- uCGACGC-GCUcGGUGCGcC-CGACGAa -3'
miRNA:   3'- -GCUGCGaCGA-CCACGUuGuGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 46343 0.7 0.799138
Target:  5'- gCGcUGCUGCUGGUGCuguuuUugGcCGAGa -3'
miRNA:   3'- -GCuGCGACGACCACGuu---GugCuGCUC- -5'
8056 3' -54.9 NC_001973.1 + 110776 0.7 0.808037
Target:  5'- aCGGCGgcCUGCUccgGCGGCACGGCGAc -3'
miRNA:   3'- -GCUGC--GACGAccaCGUUGUGCUGCUc -5'
8056 3' -54.9 NC_001973.1 + 115474 0.69 0.825348
Target:  5'- gCGcCGCgUGCUGacGCAGCGCGACGuGa -3'
miRNA:   3'- -GCuGCG-ACGACcaCGUUGUGCUGCuC- -5'
8056 3' -54.9 NC_001973.1 + 91897 0.69 0.841956
Target:  5'- uCGGCcaacuGUUGCUGGUGUuccaauuuCugGACGAGc -3'
miRNA:   3'- -GCUG-----CGACGACCACGuu------GugCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.