Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8056 | 3' | -54.9 | NC_001973.1 | + | 45972 | 0.68 | 0.880728 |
Target: 5'- cCGGCGCgcucgcccugcugucGCUGGUGCcgcgaugccGGCGCG-CGAGc -3' miRNA: 3'- -GCUGCGa--------------CGACCACG---------UUGUGCuGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 63088 | 0.68 | 0.872828 |
Target: 5'- uGAgGCUGUucacguUGGUGCAcGC-CGugGAGa -3' miRNA: 3'- gCUgCGACG------ACCACGU-UGuGCugCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 15355 | 0.68 | 0.86542 |
Target: 5'- gCGGCGUUGC-GGUGUcguACACGAacaCGGGc -3' miRNA: 3'- -GCUGCGACGaCCACGu--UGUGCU---GCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 95786 | 0.69 | 0.8578 |
Target: 5'- gGGCGCgGCUGGaccgGCGugACGGCu-- -3' miRNA: 3'- gCUGCGaCGACCa---CGUugUGCUGcuc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 83880 | 0.69 | 0.849977 |
Target: 5'- gCGGCGCgaGCUcagGGaGCAGCACGACa-- -3' miRNA: 3'- -GCUGCGa-CGA---CCaCGUUGUGCUGcuc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 101013 | 0.69 | 0.841956 |
Target: 5'- uCGGCGCUGCccuUGGcGCcGCucuCGAUGAGc -3' miRNA: 3'- -GCUGCGACG---ACCaCGuUGu--GCUGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 91897 | 0.69 | 0.841956 |
Target: 5'- uCGGCcaacuGUUGCUGGUGUuccaauuuCugGACGAGc -3' miRNA: 3'- -GCUG-----CGACGACCACGuu------GugCUGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 115474 | 0.69 | 0.825348 |
Target: 5'- gCGcCGCgUGCUGacGCAGCGCGACGuGa -3' miRNA: 3'- -GCuGCG-ACGACcaCGUUGUGCUGCuC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 110776 | 0.7 | 0.808037 |
Target: 5'- aCGGCGgcCUGCUccgGCGGCACGGCGAc -3' miRNA: 3'- -GCUGC--GACGAccaCGUUGUGCUGCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 46343 | 0.7 | 0.799138 |
Target: 5'- gCGcUGCUGCUGGUGCuguuuUugGcCGAGa -3' miRNA: 3'- -GCuGCGACGACCACGuu---GugCuGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 73810 | 0.7 | 0.780894 |
Target: 5'- uCGACGC-GCUcGGUGCGcC-CGACGAa -3' miRNA: 3'- -GCUGCGaCGA-CCACGUuGuGCUGCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 89754 | 0.71 | 0.762116 |
Target: 5'- -cACGUUGCgcgGGUGCAGgucCAcCGACGAGu -3' miRNA: 3'- gcUGCGACGa--CCACGUU---GU-GCUGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 117562 | 0.71 | 0.75255 |
Target: 5'- aCGACGaCUGCgagugGGcGCGuuuCAUGGCGAGa -3' miRNA: 3'- -GCUGC-GACGa----CCaCGUu--GUGCUGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 86866 | 0.71 | 0.713314 |
Target: 5'- -cGCGCUGCggcaUGGUcgucgugaagcuGCAGCGCGGCGAc -3' miRNA: 3'- gcUGCGACG----ACCA------------CGUUGUGCUGCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 5867 | 0.71 | 0.710319 |
Target: 5'- cCGGCGUcucgagagGCUGGUGCGgcgcagcgcgcgcgACGCGaACGAGa -3' miRNA: 3'- -GCUGCGa-------CGACCACGU--------------UGUGC-UGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 81815 | 0.72 | 0.703308 |
Target: 5'- cCGGCGCcGCcGGcgGCGACgagACGACGAGc -3' miRNA: 3'- -GCUGCGaCGaCCa-CGUUG---UGCUGCUC- -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 22497 | 0.72 | 0.693243 |
Target: 5'- aCGAgGCUGCc-GUGCGuGCGCGACGAc -3' miRNA: 3'- -GCUgCGACGacCACGU-UGUGCUGCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 42588 | 0.72 | 0.693243 |
Target: 5'- uGACGgUGCUcgccaaggaGGUGCGGCGCGAgGGc -3' miRNA: 3'- gCUGCgACGA---------CCACGUUGUGCUgCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 30371 | 0.73 | 0.642327 |
Target: 5'- cCGGCGCgGCgacucgGGUGCGggccgGCGCGGCGGc -3' miRNA: 3'- -GCUGCGaCGa-----CCACGU-----UGUGCUGCUc -5' |
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8056 | 3' | -54.9 | NC_001973.1 | + | 95420 | 0.73 | 0.642327 |
Target: 5'- --cCGCUGCUGG-GCGACGCGgagcGCGAc -3' miRNA: 3'- gcuGCGACGACCaCGUUGUGC----UGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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