miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8056 5' -57.7 NC_001973.1 + 2990 0.67 0.767205
Target:  5'- cCACCCGgCGCguaagGCGCggacUCGACGc -3'
miRNA:   3'- -GUGGGCgGCGacua-CGCGa---AGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 5925 0.66 0.838036
Target:  5'- uCGCCCGCggucgCGCgcacGAUGCGCgacgCGGCc- -3'
miRNA:   3'- -GUGGGCG-----GCGa---CUACGCGaa--GCUGuu -5'
8056 5' -57.7 NC_001973.1 + 6836 0.66 0.846133
Target:  5'- gUACgCGUCGCgaGUGCGC-UCGACGGa -3'
miRNA:   3'- -GUGgGCGGCGacUACGCGaAGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 8429 0.66 0.812657
Target:  5'- gAgCCGCCGCgucgucGCGCccgUCGACGAa -3'
miRNA:   3'- gUgGGCGGCGacua--CGCGa--AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 8833 0.72 0.506323
Target:  5'- cCGCCCGCCgucccgcGCUGcugGCGCggCGACAc -3'
miRNA:   3'- -GUGGGCGG-------CGACua-CGCGaaGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 9108 0.66 0.824696
Target:  5'- gCAuCCgCGCCGCgu-UGCGCUcgcacacggcgaugaUCGACGAg -3'
miRNA:   3'- -GU-GG-GCGGCGacuACGCGA---------------AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 13349 0.69 0.668469
Target:  5'- gCACCCGgUGCUG-UGCGUggcgcgCGACGGa -3'
miRNA:   3'- -GUGGGCgGCGACuACGCGaa----GCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 14672 0.75 0.33375
Target:  5'- cCGCCCGCCGCccGGUGCugUUCGACAu -3'
miRNA:   3'- -GUGGGCGGCGa-CUACGcgAAGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 23265 0.67 0.794907
Target:  5'- -cCCCGCCGCgc--GCGCUUgccCGGCGg -3'
miRNA:   3'- guGGGCGGCGacuaCGCGAA---GCUGUu -5'
8056 5' -57.7 NC_001973.1 + 35491 0.69 0.668469
Target:  5'- aUACCCGCUGC---UGCGCcUCGACc- -3'
miRNA:   3'- -GUGGGCGGCGacuACGCGaAGCUGuu -5'
8056 5' -57.7 NC_001973.1 + 36835 0.66 0.838854
Target:  5'- aACCCGCCGaccggcCUGAgggccgacucggcgcGCGCUcuguUCGACGAc -3'
miRNA:   3'- gUGGGCGGC------GACUa--------------CGCGA----AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 42577 0.69 0.658287
Target:  5'- aCACCCGUgGCUGAcgGUGCU-CGcCAAg -3'
miRNA:   3'- -GUGGGCGgCGACUa-CGCGAaGCuGUU- -5'
8056 5' -57.7 NC_001973.1 + 45985 0.67 0.776571
Target:  5'- cCugCUGUCGCUGGUGcCGCgaugcCGGCGc -3'
miRNA:   3'- -GugGGCGGCGACUAC-GCGaa---GCUGUu -5'
8056 5' -57.7 NC_001973.1 + 49740 0.68 0.698804
Target:  5'- gCACCCGgUGCUG-UGCGUggcgcgCGACGg -3'
miRNA:   3'- -GUGGGCgGCGACuACGCGaa----GCUGUu -5'
8056 5' -57.7 NC_001973.1 + 56168 0.66 0.803859
Target:  5'- aCugUCGUCGCUGucggcgGCGCgcUCGACGu -3'
miRNA:   3'- -GugGGCGGCGACua----CGCGa-AGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 57448 0.67 0.767205
Target:  5'- gCACgCCGCCGCgcucugGAUGCGCgcuuGCAu -3'
miRNA:   3'- -GUG-GGCGGCGa-----CUACGCGaagcUGUu -5'
8056 5' -57.7 NC_001973.1 + 59378 0.71 0.517019
Target:  5'- -cCCgCGCCGCUGAUcaacGCGCUcaaCGACAAc -3'
miRNA:   3'- guGG-GCGGCGACUA----CGCGAa--GCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 66123 0.68 0.728636
Target:  5'- aACUCGCuCGUcaUGAUGCaCUUCGACGc -3'
miRNA:   3'- gUGGGCG-GCG--ACUACGcGAAGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 67746 0.67 0.75772
Target:  5'- gUugUCGCCGUgcagGAUGCGCaaCGACu- -3'
miRNA:   3'- -GugGGCGGCGa---CUACGCGaaGCUGuu -5'
8056 5' -57.7 NC_001973.1 + 69027 0.75 0.341328
Target:  5'- gACUCGCCccuagaaaaccaGCUGAUGCGCUaCGGCAc -3'
miRNA:   3'- gUGGGCGG------------CGACUACGCGAaGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.