miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 3' -60.9 NC_001973.1 + 82869 0.87 0.043383
Target:  5'- aCUCCgcgg-CGGCGCCUCCGCCGCCc -3'
miRNA:   3'- -GAGGaacaaGCCGCGGAGGCGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 104251 0.8 0.127268
Target:  5'- gUCCgucagcUGUUCGGCGgCggcgCCGCCGCCGg -3'
miRNA:   3'- gAGGa-----ACAAGCCGCgGa---GGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 71699 0.76 0.237452
Target:  5'- -gCCUUGaaccagcgaacCGGCGCCgCCGCCGCCGc -3'
miRNA:   3'- gaGGAACaa---------GCCGCGGaGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 109846 0.75 0.267628
Target:  5'- uUCCg----CGGCGUCgCCGCCGCCGa -3'
miRNA:   3'- gAGGaacaaGCCGCGGaGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 25586 0.75 0.273154
Target:  5'- cCUCCUcc-UCGGCGCCcagccugUUCGCCGCCa -3'
miRNA:   3'- -GAGGAacaAGCCGCGG-------AGGCGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 91985 0.72 0.364052
Target:  5'- uCUCCUUG-UCGuguuGCGCUUCCGCCagcuugGCCGc -3'
miRNA:   3'- -GAGGAACaAGC----CGCGGAGGCGG------CGGC- -5'
8057 3' -60.9 NC_001973.1 + 133895 0.72 0.371794
Target:  5'- -aCCUcGUucUCGGCGCCcucgcgcgUCGCCGCCGc -3'
miRNA:   3'- gaGGAaCA--AGCCGCGGa-------GGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 71789 0.7 0.472953
Target:  5'- -gCCgg---CGGCGCCcCCGUCGCCGc -3'
miRNA:   3'- gaGGaacaaGCCGCGGaGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 128412 0.7 0.491148
Target:  5'- gUCCgUGgcccaCGGCGCCUCC-CUGCCu -3'
miRNA:   3'- gAGGaACaa---GCCGCGGAGGcGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 1207 0.7 0.500366
Target:  5'- uCUUCUUcGgagUCGcCGCCgCCGCCGCCGc -3'
miRNA:   3'- -GAGGAA-Ca--AGCcGCGGaGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 46467 0.69 0.519025
Target:  5'- uUCCgccgcCGcCGCCUCCGUCGCCGu -3'
miRNA:   3'- gAGGaacaaGCcGCGGAGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 80070 0.69 0.519025
Target:  5'- cCUCCUcuuugCGGCGCUuggCCGUCGUCGa -3'
miRNA:   3'- -GAGGAacaa-GCCGCGGa--GGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 158545 0.69 0.528458
Target:  5'- cCUCCUc------CGCCUCCGCCGCCa -3'
miRNA:   3'- -GAGGAacaagccGCGGAGGCGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 28424 0.69 0.537953
Target:  5'- --gCUUGgcggccgCGGcCGCCgCCGCCGCCa -3'
miRNA:   3'- gagGAACaa-----GCC-GCGGaGGCGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 32534 0.69 0.537953
Target:  5'- gUCCaaGUucgcgagcUCGGCGaUCgCCGCCGCCGa -3'
miRNA:   3'- gAGGaaCA--------AGCCGC-GGaGGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 25716 0.69 0.547506
Target:  5'- -gCCUUGcgCGcCGCC-CgCGCCGCCGg -3'
miRNA:   3'- gaGGAACaaGCcGCGGaG-GCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 150269 0.69 0.566766
Target:  5'- uCUUCUUGUaguuuucucuugUCGGC-CCgggCCGCCGCUu -3'
miRNA:   3'- -GAGGAACA------------AGCCGcGGa--GGCGGCGGc -5'
8057 3' -60.9 NC_001973.1 + 88145 0.68 0.586195
Target:  5'- -cCCUcg-UCGGCgGCCgaCGCCGCCGa -3'
miRNA:   3'- gaGGAacaAGCCG-CGGagGCGGCGGC- -5'
8057 3' -60.9 NC_001973.1 + 123232 0.68 0.605746
Target:  5'- gUCCggc-UCGGCGUC-CCGCCGuuGc -3'
miRNA:   3'- gAGGaacaAGCCGCGGaGGCGGCggC- -5'
8057 3' -60.9 NC_001973.1 + 77288 0.67 0.635191
Target:  5'- --------aCGcCGCCUCCGCCGCCGc -3'
miRNA:   3'- gaggaacaaGCcGCGGAGGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.