miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8057 5' -57.2 NC_001973.1 + 56374 0.67 0.831564
Target:  5'- cGCCGCGcUCGgcgCCAGGCucgguauCGGGCu -3'
miRNA:   3'- uCGGCGUcAGCa--GGUCCGugu----GCUUG- -5'
8057 5' -57.2 NC_001973.1 + 121673 0.67 0.831564
Target:  5'- cGCuCGCGG-CGcCCGgauaccGGUACGCGAGCu -3'
miRNA:   3'- uCG-GCGUCaGCaGGU------CCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 74125 0.67 0.831564
Target:  5'- cGCCGguGcCGUCgGGGaauuGCGCGcAGCg -3'
miRNA:   3'- uCGGCguCaGCAGgUCCg---UGUGC-UUG- -5'
8057 5' -57.2 NC_001973.1 + 138792 0.67 0.823182
Target:  5'- cAGCCGgAGUCGcUCUuGGC--GCGAGCc -3'
miRNA:   3'- -UCGGCgUCAGC-AGGuCCGugUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 114323 0.67 0.823182
Target:  5'- cGGCuCGU--UCGUCC-GGCuCGCGAGCa -3'
miRNA:   3'- -UCG-GCGucAGCAGGuCCGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 54759 0.67 0.823182
Target:  5'- cGCuCGC-GUCGcCCAGcucgugccuGUACACGAGCa -3'
miRNA:   3'- uCG-GCGuCAGCaGGUC---------CGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 27866 0.67 0.814628
Target:  5'- cGGCCGCGGcCGcgggCgCGGGCGCGCu--- -3'
miRNA:   3'- -UCGGCGUCaGCa---G-GUCCGUGUGcuug -5'
8057 5' -57.2 NC_001973.1 + 145424 0.67 0.813764
Target:  5'- gGGCCGCGGcUCGUuuggauaUCGGGCGucgcCAgGGACa -3'
miRNA:   3'- -UCGGCGUC-AGCA-------GGUCCGU----GUgCUUG- -5'
8057 5' -57.2 NC_001973.1 + 105998 0.67 0.813764
Target:  5'- aAGCCGCgcGGU--UCCGGGCcgguucgcaucagACACGAAUa -3'
miRNA:   3'- -UCGGCG--UCAgcAGGUCCG-------------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 32570 0.67 0.805911
Target:  5'- cGCCGCcGUCGgCUcGGCgcgcugcgACACGGACg -3'
miRNA:   3'- uCGGCGuCAGCaGGuCCG--------UGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 121292 0.67 0.805911
Target:  5'- cGCgGCcGUCGcCCGcGGCGCGCGccGGCg -3'
miRNA:   3'- uCGgCGuCAGCaGGU-CCGUGUGC--UUG- -5'
8057 5' -57.2 NC_001973.1 + 14251 0.67 0.805911
Target:  5'- cGCCGCGcGUCGacaCCAGcaCGCGCGAAUc -3'
miRNA:   3'- uCGGCGU-CAGCa--GGUCc-GUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 16204 0.67 0.797038
Target:  5'- gAGCgCGCuGcgCGUUCAGcGC-CACGAACg -3'
miRNA:   3'- -UCG-GCGuCa-GCAGGUC-CGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 140032 0.67 0.794348
Target:  5'- cGGUgGCGGgcugCGcCCGGGCGCucgacgagaccaucGCGGACg -3'
miRNA:   3'- -UCGgCGUCa---GCaGGUCCGUG--------------UGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 146507 0.68 0.773302
Target:  5'- uGGcCCGCGGgaUCGUCgggCAgcagagggucgaacuGGCACACGGACa -3'
miRNA:   3'- -UC-GGCGUC--AGCAG---GU---------------CCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 111471 0.68 0.769572
Target:  5'- aGGCCGCGcgucaaguucGUCG-CCGcgccGGCGCGCGAc- -3'
miRNA:   3'- -UCGGCGU----------CAGCaGGU----CCGUGUGCUug -5'
8057 5' -57.2 NC_001973.1 + 67440 0.68 0.760163
Target:  5'- --gCGCAGgUCGggcaCCGGGCuCGCGGACg -3'
miRNA:   3'- ucgGCGUC-AGCa---GGUCCGuGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 23939 0.68 0.760163
Target:  5'- cGCCGCGGUCGUC--GGCAaGCGcuCu -3'
miRNA:   3'- uCGGCGUCAGCAGguCCGUgUGCuuG- -5'
8057 5' -57.2 NC_001973.1 + 45993 0.68 0.760163
Target:  5'- cGCUGguGcCGcgaugCC-GGCGCGCGAGCg -3'
miRNA:   3'- uCGGCguCaGCa----GGuCCGUGUGCUUG- -5'
8057 5' -57.2 NC_001973.1 + 106042 0.68 0.750642
Target:  5'- cGGCCgGCGGUCGUaguUCAGGUACAgcAGCc -3'
miRNA:   3'- -UCGG-CGUCAGCA---GGUCCGUGUgcUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.