miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8058 5' -59.9 NC_001973.1 + 26165 0.66 0.763459
Target:  5'- cCAGUUCCgCCGgcgCGGGCGCGuCgacggCGCu -3'
miRNA:   3'- aGUCGGGGaGGCa--GCUCGCGU-Ga----GCG- -5'
8058 5' -59.9 NC_001973.1 + 106798 0.66 0.763459
Target:  5'- -gAGCCCC-CCGcgcccgCGccCGCGCUUGCg -3'
miRNA:   3'- agUCGGGGaGGCa-----GCucGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 27546 0.66 0.762542
Target:  5'- gCAGUCCUcCCGUCuGAGCaGCGacaucauUUCGCg -3'
miRNA:   3'- aGUCGGGGaGGCAG-CUCG-CGU-------GAGCG- -5'
8058 5' -59.9 NC_001973.1 + 60407 0.66 0.754245
Target:  5'- -gAGCUgaUCUugcagCGGGCGCGCUCGCu -3'
miRNA:   3'- agUCGGggAGGca---GCUCGCGUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 94586 0.66 0.753318
Target:  5'- -gAGCCCCgacgcggUCgCGUaCGAGCG-GCUCGUg -3'
miRNA:   3'- agUCGGGG-------AG-GCA-GCUCGCgUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 65607 0.66 0.745866
Target:  5'- gUCGcGCCUCUacagcgacgcgcuagCGcCGAGCGCGCUCGa -3'
miRNA:   3'- -AGU-CGGGGAg--------------GCaGCUCGCGUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 44590 0.66 0.74493
Target:  5'- gUAGCCCgCggCGgcggCGAGCGgGCUCGg -3'
miRNA:   3'- aGUCGGG-GagGCa---GCUCGCgUGAGCg -5'
8058 5' -59.9 NC_001973.1 + 123167 0.66 0.74493
Target:  5'- gUCGGgUCCU-CGUCGccGGCGCGCUC-Ca -3'
miRNA:   3'- -AGUCgGGGAgGCAGC--UCGCGUGAGcG- -5'
8058 5' -59.9 NC_001973.1 + 39966 0.66 0.74493
Target:  5'- cCGGCgCCUCCGggcCGAaGCgGCGCUUcaGCa -3'
miRNA:   3'- aGUCGgGGAGGCa--GCU-CG-CGUGAG--CG- -5'
8058 5' -59.9 NC_001973.1 + 38907 0.66 0.74493
Target:  5'- --uGUUCCUCCaagucgaauGUCGAGCGCGCgCGg -3'
miRNA:   3'- aguCGGGGAGG---------CAGCUCGCGUGaGCg -5'
8058 5' -59.9 NC_001973.1 + 83065 0.66 0.743056
Target:  5'- gCGGCCuccuccuCCUCCGgCGAGCggcggcgGCGCcgUCGCg -3'
miRNA:   3'- aGUCGG-------GGAGGCaGCUCG-------CGUG--AGCG- -5'
8058 5' -59.9 NC_001973.1 + 109176 0.67 0.735523
Target:  5'- --cGCCCgCgcgCuCGcCGAGCGCGC-CGCg -3'
miRNA:   3'- aguCGGG-Ga--G-GCaGCUCGCGUGaGCG- -5'
8058 5' -59.9 NC_001973.1 + 66781 0.67 0.735523
Target:  5'- aCAGUCCCg----UGAGCGCGCUCa- -3'
miRNA:   3'- aGUCGGGGaggcaGCUCGCGUGAGcg -5'
8058 5' -59.9 NC_001973.1 + 18257 0.67 0.720302
Target:  5'- gUCGGUCCCgucggcgcacacggCCGaCGAGgGCACcagCGCc -3'
miRNA:   3'- -AGUCGGGGa-------------GGCaGCUCgCGUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 39539 0.67 0.716467
Target:  5'- --cGCCUCgUCCGUCGAuUGCACgccCGCc -3'
miRNA:   3'- aguCGGGG-AGGCAGCUcGCGUGa--GCG- -5'
8058 5' -59.9 NC_001973.1 + 73850 0.67 0.716467
Target:  5'- aCAGCCCaCaUCGUUGGGCGCGUUCu- -3'
miRNA:   3'- aGUCGGG-GaGGCAGCUCGCGUGAGcg -5'
8058 5' -59.9 NC_001973.1 + 34914 0.67 0.706834
Target:  5'- gUCAuCgCUUCCGUggcgCGAGCGaGCUCGCg -3'
miRNA:   3'- -AGUcGgGGAGGCA----GCUCGCgUGAGCG- -5'
8058 5' -59.9 NC_001973.1 + 57685 0.67 0.687398
Target:  5'- --cGCCaCCggaucgCCGgccUCGAGCGCGaauCUCGCg -3'
miRNA:   3'- aguCGG-GGa-----GGC---AGCUCGCGU---GAGCG- -5'
8058 5' -59.9 NC_001973.1 + 157903 0.68 0.677613
Target:  5'- gCGGCCgCCgcgcCCG-CGAGCGCGCaaUgGCu -3'
miRNA:   3'- aGUCGG-GGa---GGCaGCUCGCGUG--AgCG- -5'
8058 5' -59.9 NC_001973.1 + 6035 0.68 0.667793
Target:  5'- -gAGCgCgCUCCGUUGAcgcGCGCGCUCu- -3'
miRNA:   3'- agUCGgG-GAGGCAGCU---CGCGUGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.