miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 3' -53.7 NC_001973.1 + 151069 0.66 0.963692
Target:  5'- aGCUcgG-CGGacgcguaggauccUAcGCGCCCGCCGGGGu -3'
miRNA:   3'- gCGAaaCaGCU-------------AU-CGCGGGUGGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 18327 0.66 0.960546
Target:  5'- uCGCUcuugGUCgGAUGGcCGCCgGCCAGc- -3'
miRNA:   3'- -GCGAaa--CAG-CUAUC-GCGGgUGGUCuc -5'
8059 3' -53.7 NC_001973.1 + 87504 0.66 0.956835
Target:  5'- aCGUag---CGGUAGCaGCCCACCAGcGa -3'
miRNA:   3'- -GCGaaacaGCUAUCG-CGGGUGGUCuC- -5'
8059 3' -53.7 NC_001973.1 + 6428 0.66 0.956835
Target:  5'- gCGCgccGaCGAgcGCGCCCgucGCCGGAGc -3'
miRNA:   3'- -GCGaaaCaGCUauCGCGGG---UGGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 72367 0.66 0.956835
Target:  5'- aGCUcgGcCGAcgcguaagauuuUAcGCGCCCGCUAGGGu -3'
miRNA:   3'- gCGAaaCaGCU------------AU-CGCGGGUGGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 45379 0.67 0.952893
Target:  5'- cCGCcUUGcUCGAgcagcUGGuCGCCCACCAcGAa -3'
miRNA:   3'- -GCGaAAC-AGCU-----AUC-GCGGGUGGU-CUc -5'
8059 3' -53.7 NC_001973.1 + 71655 0.67 0.944299
Target:  5'- cCGCguacaaacaGUUcacAGUGCCCACCAGAGa -3'
miRNA:   3'- -GCGaaa------CAGcuaUCGCGGGUGGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 68959 0.67 0.944299
Target:  5'- aGCgc-GUCGAagUAGCGCUgCACCgAGAGc -3'
miRNA:   3'- gCGaaaCAGCU--AUCGCGG-GUGG-UCUC- -5'
8059 3' -53.7 NC_001973.1 + 119318 0.68 0.90019
Target:  5'- aGCgg-GUCG---GCGCCCGCCGcGAGu -3'
miRNA:   3'- gCGaaaCAGCuauCGCGGGUGGU-CUC- -5'
8059 3' -53.7 NC_001973.1 + 68003 0.69 0.893584
Target:  5'- gCGCgucgaggUUGUCGAgacUGGCGCCCGCg---- -3'
miRNA:   3'- -GCGa------AACAGCU---AUCGCGGGUGgucuc -5'
8059 3' -53.7 NC_001973.1 + 96201 0.69 0.893584
Target:  5'- aGCcg-GUCGc-GGUGCgCCACCAGAGu -3'
miRNA:   3'- gCGaaaCAGCuaUCGCG-GGUGGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 33113 0.69 0.890876
Target:  5'- gCGCUUgcgcagGUCGAUcaggcgcugcgucGCGCCCugCAGGu -3'
miRNA:   3'- -GCGAAa-----CAGCUAu------------CGCGGGugGUCUc -5'
8059 3' -53.7 NC_001973.1 + 37708 0.69 0.864853
Target:  5'- uGCgcacUCGAcgGGCGCCCACC-GAGu -3'
miRNA:   3'- gCGaaacAGCUa-UCGCGGGUGGuCUC- -5'
8059 3' -53.7 NC_001973.1 + 53054 0.7 0.832686
Target:  5'- gGCUUUGgaaGAagGGCGCCCGCCuguuGAc -3'
miRNA:   3'- gCGAAACag-CUa-UCGCGGGUGGu---CUc -5'
8059 3' -53.7 NC_001973.1 + 38145 0.7 0.832686
Target:  5'- gGCUUg---GAUGGgGCCCGCCgAGAGg -3'
miRNA:   3'- gCGAAacagCUAUCgCGGGUGG-UCUC- -5'
8059 3' -53.7 NC_001973.1 + 17101 0.71 0.797527
Target:  5'- uGCg--GUCuGAUGGCGuCCCAgCGGAGc -3'
miRNA:   3'- gCGaaaCAG-CUAUCGC-GGGUgGUCUC- -5'
8059 3' -53.7 NC_001973.1 + 23879 0.72 0.730453
Target:  5'- gGCg--GUCaAUcGCGCCCGCCAGAa -3'
miRNA:   3'- gCGaaaCAGcUAuCGCGGGUGGUCUc -5'
8059 3' -53.7 NC_001973.1 + 19849 0.74 0.627989
Target:  5'- aGCg--GUCuAUGGCGUCCACCAGGu -3'
miRNA:   3'- gCGaaaCAGcUAUCGCGGGUGGUCUc -5'
8059 3' -53.7 NC_001973.1 + 11039 0.79 0.386488
Target:  5'- aGCg--GUCGAUGGCGUCCACCAa-- -3'
miRNA:   3'- gCGaaaCAGCUAUCGCGGGUGGUcuc -5'
8059 3' -53.7 NC_001973.1 + 101219 0.8 0.345771
Target:  5'- gCGCUUcugGUCGcgccacagcGCGCCCACCAGAGg -3'
miRNA:   3'- -GCGAAa--CAGCuau------CGCGGGUGGUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.