miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 124385 0.66 0.786133
Target:  5'- gGGCgcagCGCGCCGGccGCGCCuacGACCccgAGgaGu -3'
miRNA:   3'- -CCGa---GCGCGGCC--UGUGG---UUGG---UCgaC- -5'
8059 5' -59.2 NC_001973.1 + 7268 0.66 0.786133
Target:  5'- gGGCUCgGCGCgCGGcGCGCCcgcuACCGGg-- -3'
miRNA:   3'- -CCGAG-CGCG-GCC-UGUGGu---UGGUCgac -5'
8059 5' -59.2 NC_001973.1 + 48567 0.66 0.786133
Target:  5'- cGGC-CGCGCCGacGACgACCAgaugcgguACguGCUGc -3'
miRNA:   3'- -CCGaGCGCGGC--CUG-UGGU--------UGguCGAC- -5'
8059 5' -59.2 NC_001973.1 + 109188 0.66 0.786133
Target:  5'- cGCcgagCGCGCCGcGCAgCCGGCCcAGCUc -3'
miRNA:   3'- cCGa---GCGCGGCcUGU-GGUUGG-UCGAc -5'
8059 5' -59.2 NC_001973.1 + 33427 0.66 0.77712
Target:  5'- cGGUgUCGCGCUGcaGCACguaCAGCCAGUUGu -3'
miRNA:   3'- -CCG-AGCGCGGCc-UGUG---GUUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 14376 0.66 0.77712
Target:  5'- gGGCgcggCGagGCCGGACAgUAGCCcGCg- -3'
miRNA:   3'- -CCGa---GCg-CGGCCUGUgGUUGGuCGac -5'
8059 5' -59.2 NC_001973.1 + 17283 0.66 0.77712
Target:  5'- gGGCaUCGCGUCGuACGCCGccucCCGGCc- -3'
miRNA:   3'- -CCG-AGCGCGGCcUGUGGUu---GGUCGac -5'
8059 5' -59.2 NC_001973.1 + 128577 0.66 0.77712
Target:  5'- cGGCaUCuCGCUGG-CGCUGAUCAGCUc -3'
miRNA:   3'- -CCG-AGcGCGGCCuGUGGUUGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 8174 0.66 0.768903
Target:  5'- cGGCgggucgacggacgagCGCGCCGacGGCACCGcuuggcGCC-GCUGg -3'
miRNA:   3'- -CCGa--------------GCGCGGC--CUGUGGU------UGGuCGAC- -5'
8059 5' -59.2 NC_001973.1 + 114336 0.66 0.767984
Target:  5'- cGGCUCGCGagcaCGcACACgAuCCGGCUc -3'
miRNA:   3'- -CCGAGCGCg---GCcUGUGgUuGGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 117621 0.66 0.767984
Target:  5'- gGGUUCGaCGUagacugCGGcgcCGCCGACCAGCa- -3'
miRNA:   3'- -CCGAGC-GCG------GCCu--GUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 96898 0.67 0.758733
Target:  5'- cGGCgggCGCGUCGGAUcguucucgGCCGuUCGGCg- -3'
miRNA:   3'- -CCGa--GCGCGGCCUG--------UGGUuGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 109529 0.67 0.758733
Target:  5'- uGGCUCuuGCGCUuuugGGGCGCgAGCCGcGCg- -3'
miRNA:   3'- -CCGAG--CGCGG----CCUGUGgUUGGU-CGac -5'
8059 5' -59.2 NC_001973.1 + 123003 0.67 0.758733
Target:  5'- cGGCcagcaugaGCGCCucgaaGGGCGCCG-CCAGCg- -3'
miRNA:   3'- -CCGag------CGCGG-----CCUGUGGUuGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 123491 0.67 0.749376
Target:  5'- cGGCUCGCcggcucGUCGcACACCAcggcgcgcucGCCGGCg- -3'
miRNA:   3'- -CCGAGCG------CGGCcUGUGGU----------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 141572 0.67 0.749376
Target:  5'- aGCUCGCGCUcGACACguACguGgUGa -3'
miRNA:   3'- cCGAGCGCGGcCUGUGguUGguCgAC- -5'
8059 5' -59.2 NC_001973.1 + 6461 0.67 0.743714
Target:  5'- uGCUCGCGCgucuauuccauaaaGGACGUCAagggcgugcuguACCGGCUGg -3'
miRNA:   3'- cCGAGCGCGg-------------CCUGUGGU------------UGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 59922 0.67 0.73992
Target:  5'- aGCcgCGCGCCGcGGCGCCG--CAGCg- -3'
miRNA:   3'- cCGa-GCGCGGC-CUGUGGUugGUCGac -5'
8059 5' -59.2 NC_001973.1 + 154032 0.67 0.73992
Target:  5'- aGCUUGuCGCCGGGC-CCGAUgCAGUUu -3'
miRNA:   3'- cCGAGC-GCGGCCUGuGGUUG-GUCGAc -5'
8059 5' -59.2 NC_001973.1 + 61161 0.67 0.73992
Target:  5'- cGCUcCGCGUCGGGCggucGCCGACgCuccucGCUGa -3'
miRNA:   3'- cCGA-GCGCGGCCUG----UGGUUG-Gu----CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.