miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
806 5' -54.6 NC_000858.1 + 7222 1.1 0.000066
Target:  5'- cUCCGGCAAAGGAACAGGCAAGCACCGa -3'
miRNA:   3'- -AGGCCGUUUCCUUGUCCGUUCGUGGC- -5'
806 5' -54.6 NC_000858.1 + 659 0.71 0.094848
Target:  5'- gCCGGCuu-GGccCAcGGCAAGUACCGc -3'
miRNA:   3'- aGGCCGuuuCCuuGU-CCGUUCGUGGC- -5'
806 5' -54.6 NC_000858.1 + 8924 0.71 0.094848
Target:  5'- gCCGGCuu-GGccCAcGGCAAGUACCGc -3'
miRNA:   3'- aGGCCGuuuCCuuGU-CCGUUCGUGGC- -5'
806 5' -54.6 NC_000858.1 + 1872 0.67 0.211219
Target:  5'- uUCCGGUgcGGGAaaGCAGGUcacuGGaGCCGa -3'
miRNA:   3'- -AGGCCGuuUCCU--UGUCCGu---UCgUGGC- -5'
806 5' -54.6 NC_000858.1 + 6962 0.66 0.231486
Target:  5'- --aGGCGGAGGAGaAGGCucGGCGCa- -3'
miRNA:   3'- aggCCGUUUCCUUgUCCGu-UCGUGgc -5'
806 5' -54.6 NC_000858.1 + 4253 0.67 0.211219
Target:  5'- cCUGGUGAuGGGAuCAGGCAgauugguauGGCugCGa -3'
miRNA:   3'- aGGCCGUUuCCUU-GUCCGU---------UCGugGC- -5'
806 5' -54.6 NC_000858.1 + 5558 0.67 0.186588
Target:  5'- cUCCuGUAuAGGGGCAGGUccaugauuGGCACCc -3'
miRNA:   3'- -AGGcCGUuUCCUUGUCCGu-------UCGUGGc -5'
806 5' -54.6 NC_000858.1 + 1115 0.69 0.144832
Target:  5'- -gCGGCGGuGGcGCGGGguGGCACgGg -3'
miRNA:   3'- agGCCGUUuCCuUGUCCguUCGUGgC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.