miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 3' -62.6 NC_001973.1 + 111472 0.68 0.547625
Target:  5'- gGCCGCGCGUcaaguucGUCgCCgCGCc-GGCGCg -3'
miRNA:   3'- -CGGCGCGCG-------CAGgGG-GCGaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 113714 0.68 0.539117
Target:  5'- cGCCGCuuCGCGUCCgUCGuCUcGACGUa -3'
miRNA:   3'- -CGGCGc-GCGCAGGgGGC-GAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 107298 0.68 0.539117
Target:  5'- cGCCGCGCacGCGUUgggCCCGaugcUGGCGCg -3'
miRNA:   3'- -CGGCGCG--CGCAGg--GGGCga--ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 33135 0.68 0.529716
Target:  5'- cGCUGCGuCGCG-CCCUgcaggUGCUUGugGUc -3'
miRNA:   3'- -CGGCGC-GCGCaGGGG-----GCGAACugCGa -5'
8060 3' -62.6 NC_001973.1 + 46106 0.68 0.529716
Target:  5'- gGCCGCGUGC---CCgCGCUgGACGCg -3'
miRNA:   3'- -CGGCGCGCGcagGGgGCGAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 99347 0.68 0.529716
Target:  5'- -gCGCGCGCGUCgaCUUCGCccGGCGCc -3'
miRNA:   3'- cgGCGCGCGCAG--GGGGCGaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 109847 0.68 0.529716
Target:  5'- uCCGCG-GCGUCgCCgCCGCcgacgagGACGCg -3'
miRNA:   3'- cGGCGCgCGCAG-GG-GGCGaa-----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 105171 0.68 0.524105
Target:  5'- uCCGCGCGUGUCUCCCGauuaaauaggucGAuCGCg -3'
miRNA:   3'- cGGCGCGCGCAGGGGGCgaa---------CU-GCGa -5'
8060 3' -62.6 NC_001973.1 + 74020 0.68 0.520377
Target:  5'- gGUCGCGgGCGUCgCaCUCGaugUGGCGCa -3'
miRNA:   3'- -CGGCGCgCGCAG-G-GGGCga-ACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 52852 0.68 0.511103
Target:  5'- gGCCGCGCGCGgCCggucggUCCaGCU-GGCGCc -3'
miRNA:   3'- -CGGCGCGCGCaGG------GGG-CGAaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 74529 0.68 0.511103
Target:  5'- aCCGCGUGCGagCCgCCCGCc--ACGCa -3'
miRNA:   3'- cGGCGCGCGCa-GG-GGGCGaacUGCGa -5'
8060 3' -62.6 NC_001973.1 + 25715 0.68 0.501898
Target:  5'- aGCCuuGCGCG-CCgCCCGCgccgccGGCGCg -3'
miRNA:   3'- -CGGcgCGCGCaGG-GGGCGaa----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 31757 0.68 0.501898
Target:  5'- uGCCGCGCGCGcugCCCaCCaaCgaGAUGCa -3'
miRNA:   3'- -CGGCGCGCGCa--GGG-GGc-GaaCUGCGa -5'
8060 3' -62.6 NC_001973.1 + 54509 0.68 0.500981
Target:  5'- aGCCGCuucagguugaacaGCGgGUCCUCCGCcucgaugGGCGUg -3'
miRNA:   3'- -CGGCG-------------CGCgCAGGGGGCGaa-----CUGCGa -5'
8060 3' -62.6 NC_001973.1 + 137642 0.69 0.492767
Target:  5'- gGCCGUGCuccaaucuuUGUCCggucugaaCCGCUUGACGCg -3'
miRNA:   3'- -CGGCGCGc--------GCAGGg-------GGCGAACUGCGa -5'
8060 3' -62.6 NC_001973.1 + 128540 0.69 0.474738
Target:  5'- gGUCGUuCGCGUUCCaCUGCUUGAacCGCUu -3'
miRNA:   3'- -CGGCGcGCGCAGGG-GGCGAACU--GCGA- -5'
8060 3' -62.6 NC_001973.1 + 109509 0.69 0.474738
Target:  5'- cGCCGcCGC-CGUUCgCCGCUUGgcucuuGCGCUu -3'
miRNA:   3'- -CGGC-GCGcGCAGGgGGCGAAC------UGCGA- -5'
8060 3' -62.6 NC_001973.1 + 106804 0.69 0.457046
Target:  5'- cCCGCGCccGCG-CCCgCGCUUGcgcccGCGCUu -3'
miRNA:   3'- cGGCGCG--CGCaGGGgGCGAAC-----UGCGA- -5'
8060 3' -62.6 NC_001973.1 + 45970 0.69 0.448333
Target:  5'- gGCCgGCGCGC-UCgCCCUGCUgu-CGCUg -3'
miRNA:   3'- -CGG-CGCGCGcAG-GGGGCGAacuGCGA- -5'
8060 3' -62.6 NC_001973.1 + 121643 0.69 0.439713
Target:  5'- gGCCGaCGCGCGcCgCCUCGaagGGCGCg -3'
miRNA:   3'- -CGGC-GCGCGCaG-GGGGCgaaCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.