miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8060 5' -53.6 NC_001973.1 + 55222 0.66 0.964031
Target:  5'- aCGGCGgaGGCGGCGGcGgcGGGCGg -3'
miRNA:   3'- aGUUGCggCUGUCGUCuCuuCUCGCg -5'
8060 5' -53.6 NC_001973.1 + 118420 0.66 0.964031
Target:  5'- -aGACGCUGGCcGCcGGGcucgacGAGCGCa -3'
miRNA:   3'- agUUGCGGCUGuCGuCUCuu----CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 53700 0.66 0.961967
Target:  5'- uUCGGCGCCGAggcugaccguguagaCgAGCAcGAuGAAGAGCa- -3'
miRNA:   3'- -AGUUGCGGCU---------------G-UCGU-CU-CUUCUCGcg -5'
8060 5' -53.6 NC_001973.1 + 52168 0.66 0.961967
Target:  5'- -gGGCGCCGuacuuggcgacgagcGCGGCGGGGuc--GCGCg -3'
miRNA:   3'- agUUGCGGC---------------UGUCGUCUCuucuCGCG- -5'
8060 5' -53.6 NC_001973.1 + 92545 0.66 0.960546
Target:  5'- cUCGAgaaGCgGGCgaacaaugAGCGGAGAggaggaAGGGCGCg -3'
miRNA:   3'- -AGUUg--CGgCUG--------UCGUCUCU------UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 137879 0.66 0.960546
Target:  5'- gUCAGgGCCGcguCGGC-GAGGcccGAGUGCa -3'
miRNA:   3'- -AGUUgCGGCu--GUCGuCUCUu--CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 6411 0.66 0.960546
Target:  5'- cCGAgUGCgCGGCGGCGGcgcgccGAcGAGCGCg -3'
miRNA:   3'- aGUU-GCG-GCUGUCGUCu-----CUuCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 60438 0.66 0.960546
Target:  5'- aUCAGCucgaGCCG-CAGCAGuacguGGAcGCGCu -3'
miRNA:   3'- -AGUUG----CGGCuGUCGUCucu--UCU-CGCG- -5'
8060 5' -53.6 NC_001973.1 + 81730 0.66 0.960546
Target:  5'- aCGACGUCGGC-GUuGAGcAGGGGCaGCa -3'
miRNA:   3'- aGUUGCGGCUGuCGuCUC-UUCUCG-CG- -5'
8060 5' -53.6 NC_001973.1 + 105036 0.66 0.960546
Target:  5'- aCGACGuuGAC-GCGGGucucGGGCGCu -3'
miRNA:   3'- aGUUGCggCUGuCGUCUcuu-CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 86528 0.66 0.956835
Target:  5'- -uGGCGCCGcCGGCGcgccuGAAGAGCa- -3'
miRNA:   3'- agUUGCGGCuGUCGUcu---CUUCUCGcg -5'
8060 5' -53.6 NC_001973.1 + 94795 0.66 0.956835
Target:  5'- gCAACGCgGACGGCuGucGGucAGCGCc -3'
miRNA:   3'- aGUUGCGgCUGUCGuCu-CUucUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 22423 0.66 0.955677
Target:  5'- aCGACGCCGccgcgcccgcgcccACGGCcuuGGAGcugguguucGAGCGCa -3'
miRNA:   3'- aGUUGCGGC--------------UGUCG---UCUCuu-------CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 42723 0.67 0.954498
Target:  5'- cCAACccccaGCUGGCAGUcuguuguauaaccgaGGAGuggcAGGAGCGCg -3'
miRNA:   3'- aGUUG-----CGGCUGUCG---------------UCUC----UUCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 130194 0.67 0.952486
Target:  5'- aUCGACGCacgcgguCGGCGGCAGgcgcAGgcGAuaaaGCGCg -3'
miRNA:   3'- -AGUUGCG-------GCUGUCGUC----UCuuCU----CGCG- -5'
8060 5' -53.6 NC_001973.1 + 106589 0.67 0.948715
Target:  5'- cUCGGCGCCGcCGucaAGcGAAcGAGCGCg -3'
miRNA:   3'- -AGUUGCGGCuGUcg-UCuCUU-CUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 59484 0.67 0.948715
Target:  5'- -gAACGUCGGCGGUGGccAAGAGCa- -3'
miRNA:   3'- agUUGCGGCUGUCGUCucUUCUCGcg -5'
8060 5' -53.6 NC_001973.1 + 81029 0.67 0.948715
Target:  5'- ---cCGCCGACGGCGGuaugcGGGcCGCg -3'
miRNA:   3'- aguuGCGGCUGUCGUCucuu-CUC-GCG- -5'
8060 5' -53.6 NC_001973.1 + 7887 0.67 0.944299
Target:  5'- gCAACGCCGccggcgcguuGCAgGCGuucuguugcGAGGcGGAGCGCg -3'
miRNA:   3'- aGUUGCGGC----------UGU-CGU---------CUCU-UCUCGCG- -5'
8060 5' -53.6 NC_001973.1 + 32068 0.67 0.944299
Target:  5'- --uGCGCUGcCAGCccagcGAGAAGgugGGCGCg -3'
miRNA:   3'- aguUGCGGCuGUCGu----CUCUUC---UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.