Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 7904 | 0.67 | 0.996867 |
Target: 5'- ---uUGCAGGCGuucugUUGCGAGGcggaGCGCGu -3' miRNA: 3'- uuauAUGUCCGU-----GAUGCUCU----UGCGCu -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 23392 | 0.66 | 0.998477 |
Target: 5'- ---uUGCGGGCGugACGGcGAGCGCGc -3' miRNA: 3'- uuauAUGUCCGUgaUGCU-CUUGCGCu -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 28080 | 0.74 | 0.879709 |
Target: 5'- ----cGCGGGCACgACGAGGACGUc- -3' miRNA: 3'- uuauaUGUCCGUGaUGCUCUUGCGcu -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 29776 | 0.66 | 0.998745 |
Target: 5'- -----cCAGGCGCUGgcCGucGACGCGAc -3' miRNA: 3'- uuauauGUCCGUGAU--GCucUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 32583 | 0.7 | 0.969633 |
Target: 5'- -----uCGGcGCGCUGCGAcacGGACGCGAa -3' miRNA: 3'- uuauauGUC-CGUGAUGCU---CUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 36312 | 0.66 | 0.998972 |
Target: 5'- ----cACGGGCGCcGCGGccGACGCGGc -3' miRNA: 3'- uuauaUGUCCGUGaUGCUc-UUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 38836 | 0.68 | 0.992027 |
Target: 5'- ----cGgAGGCgGCggcgGCGAGGGCGCGGg -3' miRNA: 3'- uuauaUgUCCG-UGa---UGCUCUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 40564 | 0.69 | 0.989488 |
Target: 5'- ---uUGguGGCugUACGAGGGgGUGGg -3' miRNA: 3'- uuauAUguCCGugAUGCUCUUgCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 42603 | 0.69 | 0.988002 |
Target: 5'- ----aGgAGGUGCggcGCGAGGGCGCGGu -3' miRNA: 3'- uuauaUgUCCGUGa--UGCUCUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 44441 | 0.66 | 0.998477 |
Target: 5'- ----aACGGGCGCUcggGCGcGGGCGCu- -3' miRNA: 3'- uuauaUGUCCGUGA---UGCuCUUGCGcu -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 44474 | 0.69 | 0.988002 |
Target: 5'- ----aACGGGCGCUcgggcGCGGGcaucGGCGCGGg -3' miRNA: 3'- uuauaUGUCCGUGA-----UGCUC----UUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 49138 | 0.66 | 0.998745 |
Target: 5'- ---cUGCAGGCgugGCUGCucGAGGAgGUGAu -3' miRNA: 3'- uuauAUGUCCG---UGAUG--CUCUUgCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 55972 | 0.66 | 0.998972 |
Target: 5'- ----gAgAGGCGC-GCGAcGACGCGAa -3' miRNA: 3'- uuauaUgUCCGUGaUGCUcUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 56563 | 0.71 | 0.950996 |
Target: 5'- cGAUAU-CGGGCuCUAUGAcGGGCGCGGc -3' miRNA: 3'- -UUAUAuGUCCGuGAUGCU-CUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 61075 | 0.66 | 0.998477 |
Target: 5'- --gGUACAGGCGCagacCGGGcaggccGCGCGGc -3' miRNA: 3'- uuaUAUGUCCGUGau--GCUCu-----UGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 65316 | 0.68 | 0.993099 |
Target: 5'- ---cUGCGaGCGCUGCaAGGGCGCGGa -3' miRNA: 3'- uuauAUGUcCGUGAUGcUCUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 65648 | 0.66 | 0.998972 |
Target: 5'- ----aGCAGGgcUACUuuauguGCGAGAGCGUGGc -3' miRNA: 3'- uuauaUGUCC--GUGA------UGCUCUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 70072 | 0.69 | 0.985292 |
Target: 5'- uGGUGUACGGcagggcgggcucgauGUugUGCGcGAGCGCGAa -3' miRNA: 3'- -UUAUAUGUC---------------CGugAUGCuCUUGCGCU- -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 75275 | 0.66 | 0.998161 |
Target: 5'- ----gACGGGCuCUugGAGaAGCGCu- -3' miRNA: 3'- uuauaUGUCCGuGAugCUC-UUGCGcu -5' |
|||||||
8061 | 3' | -48.8 | NC_001973.1 | + | 81039 | 0.67 | 0.996296 |
Target: 5'- cGGUAUGCGGGcCGCgucgACGGGcgUGCGc -3' miRNA: 3'- -UUAUAUGUCC-GUGa---UGCUCuuGCGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home