miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 3' -48.8 NC_001973.1 + 38836 0.68 0.992027
Target:  5'- ----cGgAGGCgGCggcgGCGAGGGCGCGGg -3'
miRNA:   3'- uuauaUgUCCG-UGa---UGCUCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 140048 0.68 0.990826
Target:  5'- -----cCGGGCGCUcgACGAGAccauCGCGGa -3'
miRNA:   3'- uuauauGUCCGUGA--UGCUCUu---GCGCU- -5'
8061 3' -48.8 NC_001973.1 + 118004 0.68 0.990826
Target:  5'- ----gACGGGCuGCguguuCGAGAGCGCGu -3'
miRNA:   3'- uuauaUGUCCG-UGau---GCUCUUGCGCu -5'
8061 3' -48.8 NC_001973.1 + 40564 0.69 0.989488
Target:  5'- ---uUGguGGCugUACGAGGGgGUGGg -3'
miRNA:   3'- uuauAUguCCGugAUGCUCUUgCGCU- -5'
8061 3' -48.8 NC_001973.1 + 42603 0.69 0.988002
Target:  5'- ----aGgAGGUGCggcGCGAGGGCGCGGu -3'
miRNA:   3'- uuauaUgUCCGUGa--UGCUCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 44474 0.69 0.988002
Target:  5'- ----aACGGGCGCUcgggcGCGGGcaucGGCGCGGg -3'
miRNA:   3'- uuauaUGUCCGUGA-----UGCUC----UUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 135929 0.69 0.988002
Target:  5'- ----aGCGGGCGCgGCGAuGGCGCGc -3'
miRNA:   3'- uuauaUGUCCGUGaUGCUcUUGCGCu -5'
8061 3' -48.8 NC_001973.1 + 142611 0.69 0.988002
Target:  5'- ----cGgAGGCGCUcCGaAGGGCGCGAc -3'
miRNA:   3'- uuauaUgUCCGUGAuGC-UCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 70072 0.69 0.985292
Target:  5'- uGGUGUACGGcagggcgggcucgauGUugUGCGcGAGCGCGAa -3'
miRNA:   3'- -UUAUAUGUC---------------CGugAUGCuCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 132444 0.7 0.978012
Target:  5'- --gGUGgAGGCGCcgGCG-GGGCGCGGc -3'
miRNA:   3'- uuaUAUgUCCGUGa-UGCuCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 144163 0.7 0.975436
Target:  5'- ----cGCAGG-ACUACGAGcGCGCGc -3'
miRNA:   3'- uuauaUGUCCgUGAUGCUCuUGCGCu -5'
8061 3' -48.8 NC_001973.1 + 32583 0.7 0.969633
Target:  5'- -----uCGGcGCGCUGCGAcacGGACGCGAa -3'
miRNA:   3'- uuauauGUC-CGUGAUGCU---CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 115367 0.7 0.969633
Target:  5'- ----gACAucGaGCACUACGuGGACGCGAc -3'
miRNA:   3'- uuauaUGU--C-CGUGAUGCuCUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 95779 0.71 0.962913
Target:  5'- cAUGUACGGGCGCgGCuGGAccgGCGUGAc -3'
miRNA:   3'- uUAUAUGUCCGUGaUGcUCU---UGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 136426 0.71 0.962913
Target:  5'- --aAUGCAcGCGCUGCGcGAGCGCa- -3'
miRNA:   3'- uuaUAUGUcCGUGAUGCuCUUGCGcu -5'
8061 3' -48.8 NC_001973.1 + 117951 0.71 0.962552
Target:  5'- ----gACGGGCgcgacaucuucgACUACGAGAcggccguGCGCGAa -3'
miRNA:   3'- uuauaUGUCCG------------UGAUGCUCU-------UGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 86626 0.71 0.959191
Target:  5'- ----aAgAGGCGCUACGAGuGCGCc- -3'
miRNA:   3'- uuauaUgUCCGUGAUGCUCuUGCGcu -5'
8061 3' -48.8 NC_001973.1 + 106158 0.71 0.950996
Target:  5'- --gAUAguGGCACUGCGucuuGGGCGuCGAc -3'
miRNA:   3'- uuaUAUguCCGUGAUGCu---CUUGC-GCU- -5'
8061 3' -48.8 NC_001973.1 + 56563 0.71 0.950996
Target:  5'- cGAUAU-CGGGCuCUAUGAcGGGCGCGGc -3'
miRNA:   3'- -UUAUAuGUCCGuGAUGCU-CUUGCGCU- -5'
8061 3' -48.8 NC_001973.1 + 132606 0.73 0.901087
Target:  5'- cGUGUACAuGGCGCUGgaGGcGAGCGCGGa -3'
miRNA:   3'- uUAUAUGU-CCGUGAUg-CU-CUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.