miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 6504 0.66 0.593982
Target:  5'- aCCGGCUgGgCGGCGcGgGCgUGCCGa -3'
miRNA:   3'- aGGCUGAgCgGCUGC-CgCGgGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 31357 0.66 0.593982
Target:  5'- cUCUGcguGgUCGCCGcgGCGGUGUgCGCCaGCg -3'
miRNA:   3'- -AGGC---UgAGCGGC--UGCCGCGgGCGG-CG- -5'
8061 5' -64.2 NC_001973.1 + 83031 0.66 0.593982
Target:  5'- aUUCGGCggGCgaGGCGGCgcGCCCGUCGa -3'
miRNA:   3'- -AGGCUGagCGg-CUGCCG--CGGGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 120315 0.66 0.593035
Target:  5'- aUgGugUCGUgcggagaCGACGGCG-CgGCCGCa -3'
miRNA:   3'- aGgCugAGCG-------GCUGCCGCgGgCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 149306 0.66 0.584521
Target:  5'- cCCGuaaagGCCG-CGGgGCCUGUCGCu -3'
miRNA:   3'- aGGCugag-CGGCuGCCgCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 38824 0.66 0.584521
Target:  5'- aUCGACUC-CCGGCggaGGCGgCgGCgGCg -3'
miRNA:   3'- aGGCUGAGcGGCUG---CCGCgGgCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 32213 0.66 0.584521
Target:  5'- gUCCG-CUUGCgCGccccACGGCGCCugauugacgggCGCCGg -3'
miRNA:   3'- -AGGCuGAGCG-GC----UGCCGCGG-----------GCGGCg -5'
8061 5' -64.2 NC_001973.1 + 23200 0.66 0.584521
Target:  5'- -aUGACgcgCGCCGACGaGCGCgCaGUgGCg -3'
miRNA:   3'- agGCUGa--GCGGCUGC-CGCGgG-CGgCG- -5'
8061 5' -64.2 NC_001973.1 + 45599 0.66 0.584521
Target:  5'- aCCG--UCGCCGGCGGaGCgCGUCGg -3'
miRNA:   3'- aGGCugAGCGGCUGCCgCGgGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 16006 0.66 0.584521
Target:  5'- gCCGGa-CGaCCGAUGGCGCCaGCUcgGCg -3'
miRNA:   3'- aGGCUgaGC-GGCUGCCGCGGgCGG--CG- -5'
8061 5' -64.2 NC_001973.1 + 143740 0.66 0.584521
Target:  5'- gUCC-ACUUGCCGcCGGCucGUCUcgaaGCCGCu -3'
miRNA:   3'- -AGGcUGAGCGGCuGCCG--CGGG----CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 16145 0.66 0.583577
Target:  5'- gCCGcuacagcAUUCGUCGcuguggacgcacACGGCGCCCgugucggcgcagGCCGCu -3'
miRNA:   3'- aGGC-------UGAGCGGC------------UGCCGCGGG------------CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 123419 0.66 0.57509
Target:  5'- aCCGcCUCGCCGgugcacGCGGuCGUCaGCgGCa -3'
miRNA:   3'- aGGCuGAGCGGC------UGCC-GCGGgCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 82473 0.66 0.57509
Target:  5'- gCCGugUcCGCCggcccgauggaGACGcGCGCCuUGCCGg -3'
miRNA:   3'- aGGCugA-GCGG-----------CUGC-CGCGG-GCGGCg -5'
8061 5' -64.2 NC_001973.1 + 59872 0.66 0.57509
Target:  5'- cUCCGACgcgCGCggccccaaCGGCGGCGCggugucggCCaacgcgagccaGCCGCg -3'
miRNA:   3'- -AGGCUGa--GCG--------GCUGCCGCG--------GG-----------CGGCG- -5'
8061 5' -64.2 NC_001973.1 + 4915 0.66 0.57509
Target:  5'- aUCgUGACggaaaCGUCGGCGG-GCUCGUCGCc -3'
miRNA:   3'- -AG-GCUGa----GCGGCUGCCgCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 2092 0.66 0.57509
Target:  5'- uUCCGcaaUCGCCGGCGcGUacuuGCCCG-UGCa -3'
miRNA:   3'- -AGGCug-AGCGGCUGC-CG----CGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 126537 0.66 0.57509
Target:  5'- gCCGAuCUCGCacaCGGCcagcguguGGCGCa-GCCGCg -3'
miRNA:   3'- aGGCU-GAGCG---GCUG--------CCGCGggCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 27874 0.66 0.57509
Target:  5'- nCCG-CgggCGCgGGCGcGCuCUCGCCGCg -3'
miRNA:   3'- aGGCuGa--GCGgCUGC-CGcGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 5747 0.66 0.57509
Target:  5'- aCgGGC-CGCCGAagcggcccaCGGCGCUacgcgcguCGCCGUg -3'
miRNA:   3'- aGgCUGaGCGGCU---------GCCGCGG--------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.