Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8062 | 5' | -54.8 | NC_001973.1 | + | 27871 | 0.79 | 0.290183 |
Target: 5'- ---gCGGCCGCGGGCGCGGGc--GCGc -3' miRNA: 3'- uuuaGCCGGUGCCCGUGCUCaaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 152384 | 0.74 | 0.569005 |
Target: 5'- ---aCGGCCggcgcggGCGGGCGCGGGgcgGCGc -3' miRNA: 3'- uuuaGCCGG-------UGCCCGUGCUCaaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 97971 | 0.73 | 0.600859 |
Target: 5'- --uUCGGgCACGGGCACGAcgcggucgcgGUcgGCGa -3' miRNA: 3'- uuuAGCCgGUGCCCGUGCU----------CAaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 102630 | 0.72 | 0.642262 |
Target: 5'- gGAcgCGGCCACGGcGCGCGAcug-GCa -3' miRNA: 3'- -UUuaGCCGGUGCC-CGUGCUcaaaCGc -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 63816 | 0.72 | 0.652613 |
Target: 5'- cGAcgCGGCC-UGGGCaACGAGUgcGCGu -3' miRNA: 3'- -UUuaGCCGGuGCCCG-UGCUCAaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 4646 | 0.72 | 0.673256 |
Target: 5'- -uGUCGGCgGCGGGCGCc-GUcgGCGa -3' miRNA: 3'- uuUAGCCGgUGCCCGUGcuCAaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 132543 | 0.71 | 0.734063 |
Target: 5'- gGGcgCGGCgGCGGGCuCGAGcgcgGCGg -3' miRNA: 3'- -UUuaGCCGgUGCCCGuGCUCaaa-CGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 56215 | 0.7 | 0.763371 |
Target: 5'- -cGUCGGCgC-CGGGCGCGA---UGCGu -3' miRNA: 3'- uuUAGCCG-GuGCCCGUGCUcaaACGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 31083 | 0.69 | 0.809707 |
Target: 5'- gAAGUUGGCCAgcgaGGGCGCGuuGGUgaugUUGUGg -3' miRNA: 3'- -UUUAGCCGGUg---CCCGUGC--UCA----AACGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 46025 | 0.69 | 0.835602 |
Target: 5'- -uGUCuGGCCAUGGGCGCGcugcUGCu -3' miRNA: 3'- uuUAG-CCGGUGCCCGUGCucaaACGc -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 30481 | 0.69 | 0.835602 |
Target: 5'- cGGcgUGGCCGCagucGGGCACGAcggUGCGc -3' miRNA: 3'- -UUuaGCCGGUG----CCCGUGCUcaaACGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 78629 | 0.68 | 0.85193 |
Target: 5'- ----aGGCCGCGGGCGCucGag-GCGa -3' miRNA: 3'- uuuagCCGGUGCCCGUGcuCaaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 39413 | 0.68 | 0.85193 |
Target: 5'- cAGGUCGGCCGCGgugaGGCGCGucgcGUccaggGCGa -3' miRNA: 3'- -UUUAGCCGGUGC----CCGUGCu---CAaa---CGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 54036 | 0.68 | 0.874878 |
Target: 5'- -cGUCGGgCAgguuguUGGGCACGGGgccgUGCa -3' miRNA: 3'- uuUAGCCgGU------GCCCGUGCUCaa--ACGc -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 63632 | 0.68 | 0.882089 |
Target: 5'- cAAAUCGGCCGCGuGGgGCGGc---GCGc -3' miRNA: 3'- -UUUAGCCGGUGC-CCgUGCUcaaaCGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 74688 | 0.67 | 0.889074 |
Target: 5'- ---aCGGgCACGGGCGCGcaUUUcGCGg -3' miRNA: 3'- uuuaGCCgGUGCCCGUGCucAAA-CGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 55234 | 0.67 | 0.914658 |
Target: 5'- ---gCGGCgGCGGGCGgCGAGag-GCc -3' miRNA: 3'- uuuaGCCGgUGCCCGU-GCUCaaaCGc -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 41772 | 0.66 | 0.918738 |
Target: 5'- -cGUCaaGCCgcugcccgagaacgGCGGGCGCGAGUgggUGCu -3' miRNA: 3'- uuUAGc-CGG--------------UGCCCGUGCUCAa--ACGc -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 21543 | 0.66 | 0.920451 |
Target: 5'- --cUCGGCguCGGGCGCGccguGGUcccgGCGc -3' miRNA: 3'- uuuAGCCGguGCCCGUGC----UCAaa--CGC- -5' |
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8062 | 5' | -54.8 | NC_001973.1 | + | 144748 | 0.66 | 0.920451 |
Target: 5'- gGAggCGGCCgaggagGCGGcGCGCGAGgacaagUGCu -3' miRNA: 3'- -UUuaGCCGG------UGCC-CGUGCUCaa----ACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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