miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8063 3' -61.3 NC_001973.1 + 111761 0.68 0.580961
Target:  5'- -cGACCUgCGCG--GCGUCAGAuCUGCg -3'
miRNA:   3'- uaCUGGAgGCGCcuCGCGGUCU-GGCG- -5'
8063 3' -61.3 NC_001973.1 + 121294 0.68 0.580961
Target:  5'- -cGGCCgucgcCCGCGGcgcGCGCCggcGGACgCGCc -3'
miRNA:   3'- uaCUGGa----GGCGCCu--CGCGG---UCUG-GCG- -5'
8063 3' -61.3 NC_001973.1 + 126047 0.68 0.561467
Target:  5'- uUGAgCUCUGCcGAcGCGUaAGACCGCa -3'
miRNA:   3'- uACUgGAGGCGcCU-CGCGgUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 7908 0.68 0.561467
Target:  5'- -aGGCgUUCuguugcgagGCGGAGCGCguGugCGCg -3'
miRNA:   3'- uaCUGgAGG---------CGCCUCGCGguCugGCG- -5'
8063 3' -61.3 NC_001973.1 + 157947 0.68 0.551786
Target:  5'- aAUGACCUCgGCGGucgAGuCGCCcGGCgUGCu -3'
miRNA:   3'- -UACUGGAGgCGCC---UC-GCGGuCUG-GCG- -5'
8063 3' -61.3 NC_001973.1 + 67594 0.68 0.538319
Target:  5'- uUGGCCgucguucgguuggCgGCGGAGCugguGCCGG-CCGCg -3'
miRNA:   3'- uACUGGa------------GgCGCCUCG----CGGUCuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 69924 0.69 0.513624
Target:  5'- -aGGCCgCCGCGGcGCGUgAGcaggccccuGCCGCg -3'
miRNA:   3'- uaCUGGaGGCGCCuCGCGgUC---------UGGCG- -5'
8063 3' -61.3 NC_001973.1 + 95428 0.69 0.513624
Target:  5'- -gGGCga-CGCGGAGCGC--GACCGCg -3'
miRNA:   3'- uaCUGgagGCGCCUCGCGguCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 152385 0.69 0.485725
Target:  5'- -cGGCCggCGCGGgcgGGCGCgGGGCgGCg -3'
miRNA:   3'- uaCUGGagGCGCC---UCGCGgUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 529 0.69 0.485725
Target:  5'- cGUGACCUCCGU---GCGCCAauUCGCg -3'
miRNA:   3'- -UACUGGAGGCGccuCGCGGUcuGGCG- -5'
8063 3' -61.3 NC_001973.1 + 59974 0.69 0.476585
Target:  5'- -aGGCagCCGCcGGGC-CCAGACCGCg -3'
miRNA:   3'- uaCUGgaGGCGcCUCGcGGUCUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 8611 0.69 0.476585
Target:  5'- -cGGCCgcgCCGCGGAcGaCGCCgccgAGGCCGa -3'
miRNA:   3'- uaCUGGa--GGCGCCU-C-GCGG----UCUGGCg -5'
8063 3' -61.3 NC_001973.1 + 53394 0.7 0.471143
Target:  5'- --cGCCUCCucgcccgccggcacgGgCGGAGCGCCGGGCgCGUc -3'
miRNA:   3'- uacUGGAGG---------------C-GCCUCGCGGUCUG-GCG- -5'
8063 3' -61.3 NC_001973.1 + 17109 0.7 0.449697
Target:  5'- gAUGGCgUCCcaGCGGAGCGCgGGcGCCacGCg -3'
miRNA:   3'- -UACUGgAGG--CGCCUCGCGgUC-UGG--CG- -5'
8063 3' -61.3 NC_001973.1 + 82869 0.71 0.40682
Target:  5'- ----aCUCCGCGGcGGCGCCuccGCCGCc -3'
miRNA:   3'- uacugGAGGCGCC-UCGCGGuc-UGGCG- -5'
8063 3' -61.3 NC_001973.1 + 52718 0.71 0.40682
Target:  5'- --aGCCgCCGCagcucGAGCGCCAGGCgGCg -3'
miRNA:   3'- uacUGGaGGCGc----CUCGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 9924 0.71 0.390401
Target:  5'- cGUGACCUgCCGCGGgaAGuUGCCc-GCCGCg -3'
miRNA:   3'- -UACUGGA-GGCGCC--UC-GCGGucUGGCG- -5'
8063 3' -61.3 NC_001973.1 + 27866 0.71 0.390401
Target:  5'- -cGGCCgcggCCGCGG-GCGCgGGcgcgcucucGCCGCg -3'
miRNA:   3'- uaCUGGa---GGCGCCuCGCGgUC---------UGGCG- -5'
8063 3' -61.3 NC_001973.1 + 110358 0.71 0.382356
Target:  5'- --cGCCUCgGCGGccGCGUCGGACgGCg -3'
miRNA:   3'- uacUGGAGgCGCCu-CGCGGUCUGgCG- -5'
8063 3' -61.3 NC_001973.1 + 70548 0.72 0.351297
Target:  5'- -cGGCCUCC-CGuGAGC-CgGGACCGCa -3'
miRNA:   3'- uaCUGGAGGcGC-CUCGcGgUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.