miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8063 5' -57.5 NC_001973.1 + 21490 0.76 0.361611
Target:  5'- -aGCGcGUCGCGGcCCGCCGAcucGAGGUUGc -3'
miRNA:   3'- uaUGC-UAGUGCC-GGCGGCU---CUCCAGC- -5'
8063 5' -57.5 NC_001973.1 + 38136 0.72 0.520177
Target:  5'- -cACGAaCGCGGCuuggauggggccCGCCGAGAGGaCGg -3'
miRNA:   3'- uaUGCUaGUGCCG------------GCGGCUCUCCaGC- -5'
8063 5' -57.5 NC_001973.1 + 112626 0.71 0.618152
Target:  5'- uGUAUGGUCACGGCCcaGCCGuAGGcgagcggcaagccGGUCa -3'
miRNA:   3'- -UAUGCUAGUGCCGG--CGGC-UCU-------------CCAGc -5'
8063 5' -57.5 NC_001973.1 + 83934 0.7 0.639281
Target:  5'- -aGCGGaCACGGCgCGCCGcucGGAGG-CGg -3'
miRNA:   3'- uaUGCUaGUGCCG-GCGGC---UCUCCaGC- -5'
8063 5' -57.5 NC_001973.1 + 32552 0.7 0.649338
Target:  5'- -gGCGAUCGCcGCCGCCGAcgccGccGUCGg -3'
miRNA:   3'- uaUGCUAGUGcCGGCGGCU----CucCAGC- -5'
8063 5' -57.5 NC_001973.1 + 104269 0.7 0.649338
Target:  5'- -gGCGG-CGCcGCCGCCGGGcuGGUCGu -3'
miRNA:   3'- uaUGCUaGUGcCGGCGGCUCu-CCAGC- -5'
8063 5' -57.5 NC_001973.1 + 30795 0.69 0.699264
Target:  5'- -aAUG-UgGCGGUCGcCCGAGGGGUUGg -3'
miRNA:   3'- uaUGCuAgUGCCGGC-GGCUCUCCAGC- -5'
8063 5' -57.5 NC_001973.1 + 105492 0.69 0.70912
Target:  5'- --cCGggCGCGuuGCCGCCGuaguuGAGGUCGc -3'
miRNA:   3'- uauGCuaGUGC--CGGCGGCu----CUCCAGC- -5'
8063 5' -57.5 NC_001973.1 + 109849 0.68 0.747823
Target:  5'- -cGCGGcgUCGCcGCCGCCGAcGAGGacgCGg -3'
miRNA:   3'- uaUGCU--AGUGcCGGCGGCU-CUCCa--GC- -5'
8063 5' -57.5 NC_001973.1 + 8212 0.68 0.756335
Target:  5'- -gGCGccgCugGGCCGCCaagccgcGAGAGGUg- -3'
miRNA:   3'- uaUGCua-GugCCGGCGG-------CUCUCCAgc -5'
8063 5' -57.5 NC_001973.1 + 22734 0.68 0.756335
Target:  5'- -gGCGAgcCGCGGCCGUaucugugCGAGGGGggCGa -3'
miRNA:   3'- uaUGCUa-GUGCCGGCG-------GCUCUCCa-GC- -5'
8063 5' -57.5 NC_001973.1 + 79972 0.68 0.757276
Target:  5'- gAUGCGAUCGCcGuuGCCGGGcAGaaaGUCGa -3'
miRNA:   3'- -UAUGCUAGUGcCggCGGCUC-UC---CAGC- -5'
8063 5' -57.5 NC_001973.1 + 80078 0.68 0.766621
Target:  5'- uUGCGG-CGCuuGGCCGUCGucGAGGUCu -3'
miRNA:   3'- uAUGCUaGUG--CCGGCGGCu-CUCCAGc -5'
8063 5' -57.5 NC_001973.1 + 82768 0.68 0.775851
Target:  5'- --uCGAUCugcaGGUCGCCGAGuuGGUCc -3'
miRNA:   3'- uauGCUAGug--CCGGCGGCUCu-CCAGc -5'
8063 5' -57.5 NC_001973.1 + 24301 0.68 0.784957
Target:  5'- -gGCGAcCACGGCgcgcgucgaCGCCGaAGAGGUg- -3'
miRNA:   3'- uaUGCUaGUGCCG---------GCGGC-UCUCCAgc -5'
8063 5' -57.5 NC_001973.1 + 9400 0.68 0.784957
Target:  5'- -cGCGAUC-CGGCCGUCGGcaacaaguuGGUCa -3'
miRNA:   3'- uaUGCUAGuGCCGGCGGCUcu-------CCAGc -5'
8063 5' -57.5 NC_001973.1 + 137875 0.68 0.79393
Target:  5'- -cGCGGUCAgGGCCGCguCGGcGAGGccCGa -3'
miRNA:   3'- uaUGCUAGUgCCGGCG--GCU-CUCCa-GC- -5'
8063 5' -57.5 NC_001973.1 + 70362 0.67 0.811444
Target:  5'- -gGCGA--GCGGCCGCU---GGGUCGg -3'
miRNA:   3'- uaUGCUagUGCCGGCGGcucUCCAGC- -5'
8063 5' -57.5 NC_001973.1 + 16954 0.67 0.836517
Target:  5'- -cGCGAa-GCGGCCGugcCCGAGuuuuuGGUCGu -3'
miRNA:   3'- uaUGCUagUGCCGGC---GGCUCu----CCAGC- -5'
8063 5' -57.5 NC_001973.1 + 34090 0.67 0.836517
Target:  5'- -gGCGGUgGCGuaGCCGC--AGAGGUCGu -3'
miRNA:   3'- uaUGCUAgUGC--CGGCGgcUCUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.