miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8064 5' -50.2 NC_001973.1 + 97082 0.66 0.995678
Target:  5'- cCGCGAAGCGuACAACUacACGcGCAaGUUg -3'
miRNA:   3'- -GCGUUUCGU-UGUUGA--UGC-CGUaCGGg -5'
8064 5' -50.2 NC_001973.1 + 39709 0.66 0.99495
Target:  5'- aCGCGucGAGCAGC----GCGGCcgccAUGUCCg -3'
miRNA:   3'- -GCGU--UUCGUUGuugaUGCCG----UACGGG- -5'
8064 5' -50.2 NC_001973.1 + 117172 0.66 0.99495
Target:  5'- --aAGGGCAGCuugccgccguGC-ACGuGCAUGCCCa -3'
miRNA:   3'- gcgUUUCGUUGu---------UGaUGC-CGUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 137968 0.66 0.99495
Target:  5'- uGaCAucuuGCGACAGUUGCGGCccGUGCCg -3'
miRNA:   3'- gC-GUuu--CGUUGUUGAUGCCG--UACGGg -5'
8064 5' -50.2 NC_001973.1 + 21491 0.66 0.99495
Target:  5'- gCGCGucGCGGCccgccGACU-CGaGguUGCCCa -3'
miRNA:   3'- -GCGUuuCGUUG-----UUGAuGC-CguACGGG- -5'
8064 5' -50.2 NC_001973.1 + 94794 0.66 0.99495
Target:  5'- uGCAAcGCgGACGGCUGuCGGuCAgcGCCCc -3'
miRNA:   3'- gCGUUuCG-UUGUUGAU-GCC-GUa-CGGG- -5'
8064 5' -50.2 NC_001973.1 + 155637 0.66 0.994126
Target:  5'- aGCuu-GCAGCcGCUcCGGC--GCCCg -3'
miRNA:   3'- gCGuuuCGUUGuUGAuGCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 120954 0.66 0.994126
Target:  5'- uGCAcGGCGGcCAGCgcgGCGGUuUGCgCg -3'
miRNA:   3'- gCGUuUCGUU-GUUGa--UGCCGuACGgG- -5'
8064 5' -50.2 NC_001973.1 + 153726 0.67 0.993197
Target:  5'- aGCAGcAGCAGCAGCaguagcaGCGGCA-GCg- -3'
miRNA:   3'- gCGUU-UCGUUGUUGa------UGCCGUaCGgg -5'
8064 5' -50.2 NC_001973.1 + 46533 0.67 0.993197
Target:  5'- aCGCGAcgccucGCAACAGCgcCGaCcgGCCCg -3'
miRNA:   3'- -GCGUUu-----CGUUGUUGauGCcGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 110162 0.67 0.993197
Target:  5'- aGCAGAGCGGCAAgUGgGaGCc-GCUCa -3'
miRNA:   3'- gCGUUUCGUUGUUgAUgC-CGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 39941 0.67 0.993197
Target:  5'- aCGCGcGAGC-GCAACU-CGcGCA-GCCCc -3'
miRNA:   3'- -GCGU-UUCGuUGUUGAuGC-CGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 57823 0.67 0.992154
Target:  5'- gGCGAAGU-ACucCUGCGGCGUGgaCUCu -3'
miRNA:   3'- gCGUUUCGuUGuuGAUGCCGUAC--GGG- -5'
8064 5' -50.2 NC_001973.1 + 141928 0.67 0.992154
Target:  5'- aGCAGcGGCGGCAACaACaGCA-GCUCg -3'
miRNA:   3'- gCGUU-UCGUUGUUGaUGcCGUaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 3836 0.67 0.992154
Target:  5'- gGCucgcCGGCGAUUugGGCcgGCUCg -3'
miRNA:   3'- gCGuuucGUUGUUGAugCCGuaCGGG- -5'
8064 5' -50.2 NC_001973.1 + 115398 0.67 0.992154
Target:  5'- gGCuGAGCGcgcACGAUUcGCGGC-UGCUCa -3'
miRNA:   3'- gCGuUUCGU---UGUUGA-UGCCGuACGGG- -5'
8064 5' -50.2 NC_001973.1 + 16926 0.67 0.991469
Target:  5'- gGCGgcGCAGCAAaaagaagggcguuucCgcgaaGCGGcCGUGCCCg -3'
miRNA:   3'- gCGUuuCGUUGUU---------------Ga----UGCC-GUACGGG- -5'
8064 5' -50.2 NC_001973.1 + 103929 0.67 0.990988
Target:  5'- gCGCGucGUcGCGGCgcGgGGCGUGCCg -3'
miRNA:   3'- -GCGUuuCGuUGUUGa-UgCCGUACGGg -5'
8064 5' -50.2 NC_001973.1 + 7919 0.67 0.990988
Target:  5'- uGCGAGGCGgagcGCGugUgcGCGGCcgGCg- -3'
miRNA:   3'- gCGUUUCGU----UGUugA--UGCCGuaCGgg -5'
8064 5' -50.2 NC_001973.1 + 5752 0.67 0.990988
Target:  5'- cCGcCGAAGCGGCccacggcGCUACGcGCGUcGCCg -3'
miRNA:   3'- -GC-GUUUCGUUGu------UGAUGC-CGUA-CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.