miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 3' -55.6 NC_001973.1 + 136991 0.66 0.933375
Target:  5'- aACAguaGAgccccuCGAGCgCGuGCgCCGGGUCGCCg -3'
miRNA:   3'- -UGUag-CU------GCUCG-GC-CG-GGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 8170 0.66 0.933375
Target:  5'- cCGUCGGCGGGUcgaCGGaCgAGcgCGCCg -3'
miRNA:   3'- uGUAGCUGCUCG---GCCgGgUUuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 55654 0.66 0.933375
Target:  5'- cGCGUCGGauggGAGCCgaGGCCgGcggugAAUCGCg -3'
miRNA:   3'- -UGUAGCUg---CUCGG--CCGGgU-----UUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 94427 0.66 0.933375
Target:  5'- ---cCGGCGGcGuuGGCCCGucgCGCUa -3'
miRNA:   3'- uguaGCUGCU-CggCCGGGUuuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 111018 0.66 0.933375
Target:  5'- aGCAUCG-CGuGCCuGCUCA---CGCCg -3'
miRNA:   3'- -UGUAGCuGCuCGGcCGGGUuuaGCGG- -5'
8065 3' -55.6 NC_001973.1 + 52176 0.66 0.928273
Target:  5'- uACuuggCGACGAGCgCGG-CgGGGUCGCg -3'
miRNA:   3'- -UGua--GCUGCUCG-GCCgGgUUUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 81826 0.66 0.928273
Target:  5'- gGCggCGACGAGacgaCGaGCUCAGGUCGaCg -3'
miRNA:   3'- -UGuaGCUGCUCg---GC-CGGGUUUAGCgG- -5'
8065 3' -55.6 NC_001973.1 + 89774 0.66 0.928273
Target:  5'- cCAcCGACGAGUCGacGCaCAGGUCGUCu -3'
miRNA:   3'- uGUaGCUGCUCGGC--CGgGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 82764 0.66 0.928273
Target:  5'- cGCGUCGAucugcaggucgcCGAGuuGGUCCucgaggCGCUg -3'
miRNA:   3'- -UGUAGCU------------GCUCggCCGGGuuua--GCGG- -5'
8065 3' -55.6 NC_001973.1 + 61290 0.66 0.926696
Target:  5'- cACAcUCGGCaauaguggaugaagGAGgCGGCCUc-GUCGCCg -3'
miRNA:   3'- -UGU-AGCUG--------------CUCgGCCGGGuuUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 5745 0.66 0.926165
Target:  5'- ----gGACGGGCCgccgaagcGGCCCAcggcgcuacgcgcGUCGCCg -3'
miRNA:   3'- uguagCUGCUCGG--------CCGGGUu------------UAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 4331 0.66 0.922934
Target:  5'- cGCGcUCGACGAccucucGgCGGCCguGAUCGUa -3'
miRNA:   3'- -UGU-AGCUGCU------CgGCCGGguUUAGCGg -5'
8065 3' -55.6 NC_001973.1 + 146068 0.66 0.922934
Target:  5'- cGCggCGcCGAGCCGGCUCGGG-CGg- -3'
miRNA:   3'- -UGuaGCuGCUCGGCCGGGUUUaGCgg -5'
8065 3' -55.6 NC_001973.1 + 61132 0.66 0.922387
Target:  5'- gGCGUCGcuccuCGAGCucguacCGGCgCCGcuccgcgucgggcGGUCGCCg -3'
miRNA:   3'- -UGUAGCu----GCUCG------GCCG-GGU-------------UUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 36881 0.66 0.921286
Target:  5'- ---aCGACGGGCgCGccgaguucaccgccGCUCAAGUCGUCg -3'
miRNA:   3'- uguaGCUGCUCG-GC--------------CGGGUUUAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 51858 0.66 0.917359
Target:  5'- gGCGcCGuCGAGCacacGCCCGAGaugauUCGCCg -3'
miRNA:   3'- -UGUaGCuGCUCGgc--CGGGUUU-----AGCGG- -5'
8065 3' -55.6 NC_001973.1 + 122579 0.66 0.917359
Target:  5'- ----gGACGGgcGCCGGUCCGAAUCuuuGCUg -3'
miRNA:   3'- uguagCUGCU--CGGCCGGGUUUAG---CGG- -5'
8065 3' -55.6 NC_001973.1 + 45955 0.66 0.917359
Target:  5'- cGCGcucUUGACGgcGGCCGGCgCGc-UCGCCc -3'
miRNA:   3'- -UGU---AGCUGC--UCGGCCGgGUuuAGCGG- -5'
8065 3' -55.6 NC_001973.1 + 87434 0.66 0.917359
Target:  5'- cGCGUCGAU-AGCCauggggaugGGCCCGAcggCGCg -3'
miRNA:   3'- -UGUAGCUGcUCGG---------CCGGGUUua-GCGg -5'
8065 3' -55.6 NC_001973.1 + 33036 0.66 0.917359
Target:  5'- ---cCGACGAGCCaGCagaaCCAGccGUCGCUc -3'
miRNA:   3'- uguaGCUGCUCGGcCG----GGUU--UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.